Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00011 ATGTATGGACAGAGTGGGTCGTCGGACTCCGATTTGGCGCATCTCGACTCGATTAGCCGGTATTTATTGGGAGAATCGGATTCGCATCGAGACGGTAAAGTGGTAGTTTCGGGTTCCGGTGAGGCTTTTGCCCGGAGCTCTAGTTTCAGTAGCTTGTATCCTTGCCTGACGGATAATTGGGGGGAGCTGCCACTGAAAGTAGACGACTCGGAGGATATGGTCCTTGCTGGAGTACTTCGCGACGCCGTAAATGTCGGTTGGGTACCGTCACTCACTTCACCGTCGCCGGAAATCGGGAAATTTGAACTTTCGTATGTGAAATCGGAGCCGGGGATCCTTTCTCCTCTGAACCAATTTCCGGACCAGAAGAATGTACAAACGATGCCGGCGGTGGTTCCGCCGAGAGGAAAGCATTACCGTGGGGTTCGACAGCGGCCGTGGGGAAAATTCGCCGCTGAAATTCGGGATTCGGCGAAGAATGGGGCAAGGGTTTGGCTCGGAACCTTCGAGACTGCTGAGGATGCAGCTTTAGCTTACGACCGAGCGGCGTATCGGATGCGCGGCTCAAAAGCCTTACTTAACTTTCCTCTCCGGATTAACTCCGGTGAACCCGACCCGATTAGAGTGACGTCTAAGCGTTCTTCGCCGGAGCCATCGTCGTCCGCTGACAGTAGTGTATCATCGCCTAAAAGGCGGAAGAAAGCGAACGTCTCGTCACCTTCGCCAATCACGGCTCCCCAAGAAGGACAAATAAGTAAAATGACTGCGGTGGAAGAATTAAATGTAGTAAGCCACATAATGGTGTGCACACGTGGAGAAGAACTATTGGTCCGTTAG 837 52.69 MYGQSGSSDSDLAHLDSISRYLLGESDSHRDGKVVVSGSGEAFARSSSFSSLYPCLTDNWGELPLKVDDSEDMVLAGVLRDAVNVGWVPSLTSPSPEIGKFELSYVKSEPGILSPLNQFPDQKNVQTMPAVVPPRGKHYRGVRQRPWGKFAAEIRDSAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRINSGEPDPIRVTSKRSSPEPSSSADSSVSSPKRRKKANVSSPSPITAPQEGQISKMTAVEELNVVSHIMVCTRGEELLVR 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 97555 98391 - Bda023176.1 Bda06g00011 7593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00011 278 MobiDBLite consensus disorder prediction 203 250 - -
Bda06g00011 278 PANTHER DNA-BINDING DOMAIN 37 235 IPR044808 GO:0003700|GO:0009873
Bda06g00011 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 37 235 - -
Bda06g00011 278 SMART rav1_2 138 202 IPR001471 GO:0003700|GO:0006355
Bda06g00011 278 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Bda06g00011 278 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Bda06g00011 278 CDD AP2 137 196 IPR001471 GO:0003700|GO:0006355
Bda06g00011 278 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700|GO:0006355
Bda06g00011 278 MobiDBLite consensus disorder prediction 212 250 - -
Bda06g00011 278 Pfam AP2 domain 138 188 IPR001471 GO:0003700|GO:0006355
Bda06g00011 278 Gene3D AP2/ERF domain 137 199 IPR036955 GO:0003700|GO:0006355
Bda06g00011 278 SUPERFAMILY DNA-binding domain 138 198 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00011 Bda-Chr6:97555 Bda08g00598 Bda-Chr8:6108808 7.49E-160 dispersed
Bda07g01785 Bda-Chr7:33731127 Bda06g00011 Bda-Chr6:97555 6.80E-29 dispersed
Bda13g00070 Bda-Chr13:950161 Bda06g00011 Bda-Chr6:97555 2.86E-27 dispersed
Bda06g00011 Bda-Chr6:97555 Bda06g00012 Bda-Chr6:113617 5.03E-28 tandem
Bda09g00741 Bda-Chr9:12928612 Bda06g00011 Bda-Chr6:97555 1.39E-90 transposed
Bda03g01040 Bda-Chr3:9986747 Bda06g00011 Bda-Chr6:97555 1.44E-33 wgd
Bda06g00011 Bda-Chr6:97555 Bda08g00597 Bda-Chr8:6097599 4.53E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15964 PF00847 AP2 1.90E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00011 K09286 - csv:101203663 307.76