Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00037 ATGTCGGCTTGCAAAGATGAAGATCCTCGCGTACATGGCATCAAAAGTAATATTCGCGTCGTTCCCGATTTCCCCAAACCAGGAATCATGTTTCAAGACATTACCACTCTTCTCCTTGAACCGAAAGCATTCAAAGACACGATCAGTATGTTCGTTGAGCGATACAAAGACAAAAACATTTCAGTCGTTGCAGGAATAGAAGCTCGAGGTTTTATATTTGGTCCTCCAATTGCATTGGCTATCGGTGCAAAGTTTGTTCCATTGAGGAAACCGAAGAAGTTGCCTGGTACTTTTTATTTTTCGAGGAGTACGAGCTCGAATATGGAAAGAGACTGTCTCGAGATGCATGTCGGAGCATACAGGGTCCAAATCGATAATTTCCCTACTTTTTATTTGTCGCATATCTCGTCGTTCCGGGAGAGTAAGTCCGATGACCGGCGGTTTTATGTTTTCACGGCTAACCAGACTCTTCACCTGAGAACTTGTTCGAGTAAAGACCGATTCGAATGGATTCGAGCTCTGGCCGCCACTCGGAGCTTAATTCCGGTTAGGAATAGCAGCATTTCCCTTTCCTTTCCTCCAAATGACTTCTCCGCTTCGACGGCGAGGCTTAGAAATCGTCTCCTCCAGGAAGGAGCTAGCGAGACTTTAATGAAAGATTGCGAGAGTATCTTGCTCTCTGAATTTTCAGAAGTACAATTACAGCGTCAATTTCTCTACGAAGAACGATCGAATCTTCTTAACACATTGAGGCATTTAGAGGGAGCTAATATTGAAGTTGAAGCAACTCAGATTCATGATGGTGAATACCAATTGACAAAGCATGAGTTTTCAGCGAAACGGCATAAAAAATTTAGTGAATGCAGTACCGCTGAATCATCTGATGATATTGAGAAAAAAGAACTTGAGGATGTGTCAGAAGAAGATGAAATAACTTATTATGACACAAGAGATTATTTCACTGAACACACTTTTAGTTGTGATGCTATAAAGGGACCTTCGGATTGCAAAGACAAGTGTTCGAAACCTGAAAGACAATATGATGATGTAAAGAAGATGAAAACCGAAGGAGTTCTTTCTGCAAATCCATGCAGGCGGGAAAAGCTTCCTGATCCAGTTGAGGAGGAGAAAAGGGTCAGACTTTGGTCTATTATTAAAGACAATGTTGGAAAGGATCTTACGCGTGTTTGTCTTCCGGTATATTTTAATGAGCCATTATCATCCCTTCAGAAGTGTTGTGAAGAGTTAGAATATTCTTATCTCTTGGATGGAGCATATGAATGTGGAAAAGCGGGAAACAATCTACAAAGAATTCTTAATGTTGCTGCCTTTGCAGTTTCTGCCTATGCGCCATCTGATGGCCGGGAGTGTAAGCCATTCAATCCTTTGTTAGGTGAAACTTATGAGGCTGATTATCCCGAGAAAGGAATTCGCTTTTTCTCTGAAAAGGTCAGTGTATGTTTTTCCAATGTTAAGGAGAGTCACTCTATTATAGTAGCTTTTGGTTCTTCCCTTAATAGTTCAAAAGAGCATTTGTACTTGGGTAATTTCGTGATTTTGCTTTCAGGTTGTCCATCCTTTTTTGTGACTACAAATATCAATAATCTCATCTTAGGTAAAGTCTATTGCGATCACCATGGTACAATGCACATTCGAGGCAATAGACTATATTCTTGCAAACTTAAGTTCAAAGAGCACACAATTTTTGATCGAAATGCTGACCAGGTTCATGGATATGTTGAGGATATTTATGGGAAAAAGGTTGCCACATTATTTGGTAAGTGGGACGAAAGCATGTATTACATTGACGGTAAAGCATCTGAGAAGCCAAAGAGTGATGTTCCTTTATCTGATGCCCGCTTATTGTGGAAAAGAAGTCGTTACAACTTAACTTCATTTGCAATTACTCTGAATGAATTGACATCAGGACTGAAGGAGAAGCTCCCGCCCACAGATTCTAGACTTAGACCAGACCAGAGACACCTTGAAAATGGAGAATATGAGAAGGCAAATGCTGAGAAACAACGTTTGGAACGGAGGCAAAGAATTTCAAGAAAATTACAAGAAAATGGGTGGAAACCCAGGTGGTTTAAGAGAGACGGAGAAGATGGACCATTCCGCTATGTAGGTGGGTATTGGGAAGCTCGGGAGGAAGGAAATTGGGATGGATGCCCAAATATTTTTGGTGAATTGGATGAGGATTTTGTCGATTCTTTGGAAATTTCTTGA 2229 40.78 MSACKDEDPRVHGIKSNIRVVPDFPKPGIMFQDITTLLLEPKAFKDTISMFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGTFYFSRSTSSNMERDCLEMHVGAYRVQIDNFPTFYLSHISSFRESKSDDRRFYVFTANQTLHLRTCSSKDRFEWIRALAATRSLIPVRNSSISLSFPPNDFSASTARLRNRLLQEGASETLMKDCESILLSEFSEVQLQRQFLYEERSNLLNTLRHLEGANIEVEATQIHDGEYQLTKHEFSAKRHKKFSECSTAESSDDIEKKELEDVSEEDEITYYDTRDYFTEHTFSCDAIKGPSDCKDKCSKPERQYDDVKKMKTEGVLSANPCRREKLPDPVEEEKRVRLWSIIKDNVGKDLTRVCLPVYFNEPLSSLQKCCEELEYSYLLDGAYECGKAGNNLQRILNVAAFAVSAYAPSDGRECKPFNPLLGETYEADYPEKGIRFFSEKVSVCFSNVKESHSIIVAFGSSLNSSKEHLYLGNFVILLSGCPSFFVTTNINNLILGKVYCDHHGTMHIRGNRLYSCKLKFKEHTIFDRNADQVHGYVEDIYGKKVATLFGKWDESMYYIDGKASEKPKSDVPLSDARLLWKRSRYNLTSFAITLNELTSGLKEKLPPTDSRLRPDQRHLENGEYEKANAEKQRLERRQRISRKLQENGWKPRWFKRDGEDGPFRYVGGYWEAREEGNWDGCPNIFGELDEDFVDSLEIS 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 329087 345896 - Bda023206.2 Bda06g00037 7619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00037 742 SUPERFAMILY PRTase-like 11 104 IPR029057 -
Bda06g00037 742 Coils Coil 660 687 - -
Bda06g00037 742 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 529 733 IPR000648 GO:0008289
Bda06g00037 742 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 365 486 IPR000648 GO:0008289
Bda06g00037 742 PANTHER BNAC03G64980D PROTEIN 529 733 - -
Bda06g00037 742 MobiDBLite consensus disorder prediction 649 678 - -
Bda06g00037 742 MobiDBLite consensus disorder prediction 646 678 - -
Bda06g00037 742 Gene3D - 659 718 - -
Bda06g00037 742 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 112 344 IPR000648 GO:0008289
Bda06g00037 742 SUPERFAMILY PH domain-like 130 197 - -
Bda06g00037 742 PANTHER BNAC03G64980D PROTEIN 112 344 - -
Bda06g00037 742 PANTHER BNAC03G64980D PROTEIN 365 486 - -
Bda06g00037 742 SUPERFAMILY Oxysterol-binding protein-like 375 735 IPR037239 -
Bda06g00037 742 Pfam Oxysterol-binding protein 381 485 IPR000648 GO:0008289
Bda06g00037 742 Pfam Oxysterol-binding protein 529 717 IPR000648 GO:0008289
Bda06g00037 742 CDD PRTases_typeI 48 97 IPR000836 -
Bda06g00037 742 Gene3D - 527 625 - -
Bda06g00037 742 Gene3D - 2 127 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00037 K20456 OSBP; oxysterol-binding protein 1 - tcc:18606296 798.505
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00037 Bda07g00005 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00037 Bda-Chr6:329087 Bda07g00005 Bda-Chr7:75375 0 dispersed
Bda08g00569 Bda-Chr8:5788366 Bda06g00037 Bda-Chr6:329087 0 transposed
Bda06g00037 Bda-Chr6:329087 Bda06g00096 Bda-Chr6:1098666 7.25E-11 wgd
Bda06g00037 Bda-Chr6:329087 Bda08g00567 Bda-Chr8:5776384 3.34E-66 wgd
Bda06g00037 Bda-Chr6:329087 Bda09g00095 Bda-Chr9:1824771 5.06E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g511 Blo02g01049 Blo03g00169 Bda06g00037 . Bpe05g00588 Bpe07g00165 . . Cmo06g00789 Cmo16g01114 . Cma15g01141 Car02g01307 Car15g01037 . Cpe14g00881 Cpe05g00242 Bhi11g00212 . . . . . . Cla10g00276 Cam10g0285 Cec10g0293 Cco10g0290 Clacu10g0286 Cmu10g1126 Cre10g0534 . . Cone6ag0690 Cone9ag0692 Lsi07g01319 . . Cme06g02601 . Blo19g00281 Bda07g00005 . . . Bma05g00770 . . . Cmo15g01200 Cma06g00769 Cma16g01066 Car06g00687 Car16g01012 Cpe08g00749 . Bhi12g00421 . . Lac11g2262 Hepe06g1148 . Lcy12g1808 . . . . . . . . Csa03g04675 . Cme09g01638
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda08g00974 . 90 573 PRT Gene Family AT2G16570 84.6 7.2e-240 826.6
Bda08g00971 . 65 522 PRT Gene Family AT2G16570 81.9 5.7e-221 763.8
Bda08g00974 . 90 573 PRT Gene Family AT4G34740 85.6 1.0e-241 832.8
Bda08g00971 . 67 522 PRT Gene Family AT4G34740 83.2 3.3e-221 764.6
Bda08g00974 . 91 546 PRT Gene Family AT4G38880 75.1 2.4e-197 685.3
Bda08g00971 . 60 520 PRT Gene Family AT4G38880 73.0 4.3e-194 674.5
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda06g00037 CCT 5 98 PRT Gene Family AT4G22570 85.1 1.6e-44 175.3
Bda08g00567 . 5 97 PRT Gene Family AT4G22570 82.8 2.0e-42 168.3
Bda08g01357 . 4 94 PRT Gene Family AT4G22570 81.3 3.9e-38 154.1
Bda13g01256 BCT 11 100 PRT Gene Family AT4G22570 77.8 3.3e-37 151.0
Bda06g00037 CCT 1 96 PRT Gene Family AT4G12440 83.3 7.7e-41 162.9
Bda08g00567 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda01g00859 . 1 186 PRT Gene Family AT1G71750 61.4 6.6e-63 237.3
Bda09g00447 . 16 470 PRT Gene Family AT1G55810 82.2 1.1e-219 759.2
Bda07g00427 . 28 502 PRT Gene Family AT1G55810 80.0 6.2e-218 753.4
Bda13g01653 . 61 483 PRT Gene Family AT1G55810 78.3 2.5e-195 678.3
Bda09g00447 . 67 474 PRT Gene Family AT3G27440 75.2 8.6e-182 633.3
Bda13g01653 . 81 483 PRT Gene Family AT3G27440 75.4 9.9e-178 619.8
Bda07g00427 . 79 509 PRT Gene Family AT3G27440 71.2 3.2e-176 614.8
Bda13g01653 . 1 483 PRT Gene Family AT3G27190 83.4 2.0e-235 811.6
Bda09g00447 . 3 469 PRT Gene Family AT3G27190 74.7 1.4e-207 719.2
Bda07g00427 . 15 501 PRT Gene Family AT3G27190 70.9 4.8e-200 694.1
Bda05g00954 . 1 235 PRT Gene Family AT3G53900 75.0 2.8e-102 368.6
Bda09g00447 . 1 470 PRT Gene Family AT4G26510 83.7 1.0e-231 799.3
Bda07g00427 . 13 502 PRT Gene Family AT4G26510 80.1 2.9e-226 781.2
Bda13g01653 . 11 483 PRT Gene Family AT4G26510 74.4 3.7e-205 711.1
Bda13g01653 . 1 483 PRT Gene Family AT5G40870 84.7 7.6e-238 819.7
Bda09g00447 . 3 472 PRT Gene Family AT5G40870 73.4 9.0e-207 716.5
Bda07g00427 . 15 504 PRT Gene Family AT5G40870 70.5 4.8e-200 694.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00037 Bda_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0