Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00051 ATGCAGCCCAGAGGTAGTGGTGGAAGGGACCCATTTTTTGACTTTGGCGAACCTTTTACTGGTTTTGGGGGATTTGGGGGCTTTGGTGGTCATCAGAGCTTAATGTCTAATTTCTTTGGGGGAAAGGATCCATTTGATGATCCTTTCTTCGCTCGACCTTTTGGAGGCATGTTTCAGTCAAACGTTTTTGGTGCTACTGGAAGTCCTTTTGGACAACCTTTTGGACATCCTTTTGGACAACCTTTTGGACAATCTTTTGGACATCCTTTTGGACAACCTTCTGGTTTTCTTGAGCATCAAGGGGCAGTAGCTCAGGGATCAACCAGGCCAATAATTGAGGAGTTGAACTCTGATGATGAAAATGAAGAGCTAGGTAAAGATGAGGAAGAAAATCCCAGAAAGCATGGAAGGTCAAGTGACAAACCTTATGTTGAGTATCCAGAAGAGGATGTTCAAGAGAAAAAGGGCAAATATCTGCATTATGGAAATGATTATAACAGGCAAAATACTATGCAATCCCATAACCATCCTCGTAGCTTGCAATCCCATAACCATCCTCGTAGCTTTACTTTTCAAAGTTCTTCTGTGACATTTGGCGGTTCAAATGGTGCATATTACACTTCATCAACAATAAAAAGAACGGGAAGTGATGGTGTGACCATCGAAGAAAGCAAAGAAGCTGACACAACCACACAGCAAGCAACTCATCGAATCTCGAGGGGACTCCATAATAAGGGCCATTCTATGACAAGAAAGCTCCATTCAGATGGTAAGGTGGACAGTATGCAAACCTTACATAATTTGAATGAAGATGAGCTAGCTGGTTTTGAAGATGCTTGGAAAGTAAACGGCGGAAATCATTTGGCCGGGTGGAGGGAGAGCGGCAATGGCCACCACGGTAACAATGGCACCCGGCAAGGTCAGATTAGGCAAGGTGGGTGGGCTCTTCCTTCCCCTCAGCAATCAGAGAGCACAGAAAGGCTTCTAATGGACAACAAAGACCGACGACAGGTTGCGAGAAATCCGAAAATGGCGGTAGCGCGAACTACGTCGGTTGTTTTTCTTGGGCTTTTCCGTCCTCGGCAGAACAATTTGTTTTCGCCTTTCCGTTTGTGTCCAACTGTTTCGAACAACTCCGGGATAACGTTTCGGTTTGTGGGTCGAGGAATTTGTTTCAGCCGTATTCAGTGCGCCGCGTCGTATTCCGGAGACGATGGGAAAAAGGTTTCAGCTCGGCTTTCGCAGGTCCAGCAGCTATTGCAGGAGGCTGAGGAGCGAGCTTTCTGTTCGGACGACGGGCCCGTCCCTAGAATTACCATCGACCATGTAACCGTGAGTTTTGCCAGAAGTGGAGGTCCAGGTGGTCAGAATGTCAATAAAGTGAACACAAAGGTGGACATGCGGTTCAATGTCAAAAATGCTTATTGGCTAAGTGACAGGATTAGAGAGAAAATTATGCAAATGGAGAAAAATCATATTAATAAAGATGGGGAGCTTGTGATTTCTTCTACAAAAACTAGAACACAGAAAGGCAACATTGAAGATGCACTTGAAAAACTTCAGGCAATCATTGATGCCGCTTCATATGTTCCACCGCCTCCTTCAGAAGAGCAAAAGAAGAAAATAGAGAAGATGGCTGCTATTGGGGAACAAAAACGCCTCAAAAGCAAGAAGGAACTTTCAGTCAAAAAAGCATTTCGAAGAAGTCGAGAAAGTTGGGATTGA 1725 44.81 MQPRGSGGRDPFFDFGEPFTGFGGFGGFGGHQSLMSNFFGGKDPFDDPFFARPFGGMFQSNVFGATGSPFGQPFGHPFGQPFGQSFGHPFGQPSGFLEHQGAVAQGSTRPIIEELNSDDENEELGKDEEENPRKHGRSSDKPYVEYPEEDVQEKKGKYLHYGNDYNRQNTMQSHNHPRSLQSHNHPRSFTFQSSSVTFGGSNGAYYTSSTIKRTGSDGVTIEESKEADTTTQQATHRISRGLHNKGHSMTRKLHSDGKVDSMQTLHNLNEDELAGFEDAWKVNGGNHLAGWRESGNGHHGNNGTRQGQIRQGGWALPSPQQSESTERLLMDNKDRRQVARNPKMAVARTTSVVFLGLFRPRQNNLFSPFRLCPTVSNNSGITFRFVGRGICFSRIQCAASYSGDDGKKVSARLSQVQQLLQEAEERAFCSDDGPVPRITIDHVTVSFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSDRIREKIMQMEKNHINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIEKMAAIGEQKRLKSKKELSVKKAFRRSRESWD 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 547830 552712 - Bda023223.1 Bda06g00051 7633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00051 574 SUPERFAMILY Peptidyl-tRNA hydrolase domain-like 437 528 - -
Bda06g00051 574 Pfam RF-1 domain 438 563 IPR000352 GO:0003747|GO:0006415
Bda06g00051 574 PANTHER CLASS I PEPTIDE CHAIN RELEASE FACTOR 344 574 - -
Bda06g00051 574 Coils Coil 406 426 - -
Bda06g00051 574 Pfam Myelodysplasia-myeloid leukemia factor 1-interacting protein 85 281 IPR019376 -
Bda06g00051 574 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 449 465 IPR000352 GO:0003747|GO:0006415
Bda06g00051 574 MobiDBLite consensus disorder prediction 127 161 - -
Bda06g00051 574 PANTHER CLASS I PEPTIDE CHAIN RELEASE FACTOR 344 574 - -
Bda06g00051 574 Gene3D - 436 572 - -
Bda06g00051 574 MobiDBLite consensus disorder prediction 291 326 - -
Bda06g00051 574 MobiDBLite consensus disorder prediction 163 185 - -
Bda06g00051 574 MobiDBLite consensus disorder prediction 217 236 - -
Bda06g00051 574 MobiDBLite consensus disorder prediction 114 185 - -
Bda06g00051 574 MobiDBLite consensus disorder prediction 297 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00051 K15033 ICT1, MRPL58; peptidyl-tRNA hydrolase ICT1 [EC:3.1.1.29] - jre:108984800 327.405
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00051 Bda08g00558 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00051 Bda-Chr6:547830 Bda11g00276 Bda-Chr11:3198136 2.21E-45 dispersed
Bda06g00051 Bda-Chr6:547830 Bda08g00558 Bda-Chr8:5678832 9.30E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g479 Blo02g01062 Blo03g00178 Bda06g00051 Bda08g00558 Bpe05g00600 . . . Cmo06g00775 Cmo16g01088 . . . . . Cpe14g00860 . . . . . . . . . . . . . . . Cone8ag0364 Cone12ag0355 Cone6ag0714 Cone9ag0714 Lsi07g01347 . . Cme06g02634 . . . . . . Bma05g00781 Bma12g00140 . . . Cma06g00752 Cma16g01040 Car06g00673 Car16g00991 Cpe08g00767 . . . . . . . . . . . . . . . . Csa03g00322 Chy06g02002 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011191 1 0 0 5 1 0 1 1 1 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 3 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00051 Bda_Chr06 FPKM 3.765387 4.788396 0.19357 0.136393 0.631914 0.602594 0.668275 0.185 0.152946