Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00053 ATGGGAGGTAGAGGGGAGAGAGGAGGATGGGGATGGGGGTTTTCTTCGCTTGGCTCATTTCCTTCTTCCTCCTCATCTCGCTTCTTGTCATCATCATTTACCAGGTACTCTCGACGAAAGCATCTGCTTTTCAACGAAGGTCCATTGAGCGGCAGACCTAGCCTGACAGTTGAATTCTATGCTAAAGTTCATAAAAGCTTACAACCTAGAACCCACAACCGAAAATCGGCACGTCCTCAATTTACAATGATGCCAATAGGAACTCCTAGGGTACCATATAGAACTCCTGGTGAGGGAACTTGGCAGTGGGTTGATTTATGGAATGCTTTATATCGTGAGCGTGTTATTTTTATCGGGCAAAACATAGACGAAGAGTTTAGCAACAAAATATTGGCGACGATGCTATACCTCGACACCATTGAATCTTCCAAAAAATTATATATGTACATTAATGGTCCTGGTGGAGATTTAACCCCCAGCATGGCCATTTATGACACTATGCAAAGCTTGAAGAGCCCTGTAGCCACCCATTGTGTGGGGTATGCCTACAACTTAGCTGCCTTTCTTCTTGCAGCCGGAGAAAAGGGAAGCCGTTTTGCAATGCCTTTGGCAAGAATCGCCTTGCAGTCCCCAGCCGGAGCTGCTCGTGGTCAGGCTGATGATATTCGTAACGAAGCGAATGAGCTTCTAAGAATCAGAGATTACCTTTTTAACGAGCTATCGAGGAAAACAGGGCAGCCAGTCGAAAAGATTAACAAAGACTTGAGTCGGATGAAACGCTATAACGCTCAAGAAGCTCTTGAATATGGACTTATCGATCATATCGTCAGGCCGCCTCGAATAAAAGCCGATGCCCCTCGCAAGGATGCAGGAACAGGACTTGAGCTGGCGGGCCGGACTTTTCCTCGCTTCGCTGCCGAGAAATCGATCACCGGCGGAGTAACGGAAGAGGATATCGGCTTGGGTGACACAGCCGGGTTGAGAGAACCGTCTGAGTACGTTAACACCAAAGAGTACGTCAGAGTGTAG 1029 47.42 MGGRGERGGWGWGFSSLGSFPSSSSSRFLSSSFTRYSRRKHLLFNEGPLSGRPSLTVEFYAKVHKSLQPRTHNRKSARPQFTMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNKILATMLYLDTIESSKKLYMYINGPGGDLTPSMAIYDTMQSLKSPVATHCVGYAYNLAAFLLAAGEKGSRFAMPLARIALQSPAGAARGQADDIRNEANELLRIRDYLFNELSRKTGQPVEKINKDLSRMKRYNAQEALEYGLIDHIVRPPRIKADAPRKDAGTGLELAGRTFPRFAAEKSITGGVTEEDIGLGDTAGLREPSEYVNTKEYVRV 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 574841 582917 + Bda033735 Bda06g00053 7635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00053 342 Gene3D - 88 282 - -
Bda06g00053 342 CDD S14_ClpP_2 105 275 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g00053 342 Pfam Clp protease 102 277 IPR023562 -
Bda06g00053 342 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 50 289 IPR023562 -
Bda06g00053 342 PRINTS Clp protease catalytic subunit P signature 254 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g00053 342 PRINTS Clp protease catalytic subunit P signature 105 120 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g00053 342 PRINTS Clp protease catalytic subunit P signature 176 193 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g00053 342 PRINTS Clp protease catalytic subunit P signature 197 216 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g00053 342 PRINTS Clp protease catalytic subunit P signature 145 165 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g00053 342 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 279 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bda06g00053 342 SUPERFAMILY ClpP/crotonase 98 279 IPR029045 -
Bda06g00053 342 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 50 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00053 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - zju:107406406 442.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00053 Bda-Chr6:574841 Bda12g00092 Bda-Chr12:688924 1.07E-45 dispersed
Bda06g00053 Bda-Chr6:574841 Bda05g00430 Bda-Chr5:50091356 9.40E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00053 Bda_Chr06 FPKM 7.089581 8.668622 30.96179 31.31896 50.384502 51.349991 55.499504 27.187513 25.281382