Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00054 ATGGAGGTTAGAGAAAGTGGGGTTACGGTGGTTAGATCAGATGCTCCGTCGGATTACCACACAGCTCCGAGAACGGAAAACTCAGTCTCTGTCGGTAATCCCACACCGCCGGCGACAGAGCTGGGGAAGAAAAAAAGGGGCCGGCCGAGGAAATACTTACCAGACGGTTCTCTCAACCCGGCTGTGTCACCCAAGCCGATATCCTCTTCCGTTACTCCGCCGGTGATCGATTTCTCGGCAGCGAAGCGAGGAAAAGTCCGGCCCGCCAGCTCTGTGAGCAAAACTAAGGACGAAATGGAGAATATAGGTAGTGAATGGGTGGCGTGTTCTGCCGGAGCTAACTTCACGCCGCATATTATTACAGTCAACTCCGGCGATGATGTCACTACGAAAATTCTCTCGTTTTCTCAACAAGGGCCTCGAACCATATGTGTTCTAGCTGCAAATGGCATGATCTCCAGCGTAACGCTTCGCCAGCCTGATTCCTCCAGCGGTACATTGACATACGAGGGTCGGTTTGAAATATTGTCCTTATCGGGATCATTCACCCCTAACGATACGGAAGGGACACAAAGCAGAACGGGAGGAATGAGTGTCTCTTTAGCCAGTCCCGATGGACGAGTTGTCGGTGGTGGCATAGCCGGTTTACTAGTGGCTGCAAGTCCCGTACAGGTTGTGGTAGGCAGTTTTCTATCAGGAAACCAACATGAGCAGAAACCCAAGAAGCAAAAACACGACTTCAACTCAACTTCGCCACCGGCTGCAGCTCTTCCAGTTTCCGGGGAAAATCCAAAGCCAAATTTTTCAAATTCCGTGCCTTTCCGAGGCGATAATTGGTCATTACCTCCGCCGGATTCAAGAAGCAAGCCAACTGATATCAATATATCTTTACCATAA 897 50.39 MEVRESGVTVVRSDAPSDYHTAPRTENSVSVGNPTPPATELGKKKRGRPRKYLPDGSLNPAVSPKPISSSVTPPVIDFSAAKRGKVRPASSVSKTKDEMENIGSEWVACSAGANFTPHIITVNSGDDVTTKILSFSQQGPRTICVLAANGMISSVTLRQPDSSSGTLTYEGRFEILSLSGSFTPNDTEGTQSRTGGMSVSLASPDGRVVGGGIAGLLVAASPVQVVVGSFLSGNQHEQKPKKQKHDFNSTSPPAAALPVSGENPKPNFSNSVPFRGDNWSLPPPDSRSKPTDINISLP 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 580117 582175 - Bda023225.2 Bda06g00054 7636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00054 298 MobiDBLite consensus disorder prediction 20 35 - -
Bda06g00054 298 MobiDBLite consensus disorder prediction 284 298 - -
Bda06g00054 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 235 - -
Bda06g00054 298 MobiDBLite consensus disorder prediction 1 73 - -
Bda06g00054 298 Gene3D - 117 248 - -
Bda06g00054 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 230 IPR005175 -
Bda06g00054 298 MobiDBLite consensus disorder prediction 234 298 - -
Bda06g00054 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 6 298 - -
Bda06g00054 298 CDD DUF296 116 230 IPR005175 -
Bda06g00054 298 ProSiteProfiles PPC domain profile profile. 112 253 IPR005175 -
Bda06g00054 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 6 298 IPR039605 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00054 Bda07g00515 CCT
Bda06g00054 Bda07g00515 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00700 Bda-Chr3:5951529 Bda06g00054 Bda-Chr6:580117 5.06E-69 dispersed
Bda06g00054 Bda-Chr6:580117 Bda07g00515 Bda-Chr7:6608187 3.64E-136 dispersed
Bda06g00054 Bda-Chr6:580117 Bda01g00382 Bda-Chr1:29697558 6.65E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00054 - - qsu:112038658 422.165