Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00057 ATGGCCACTTCCGGTGGTGTTAGTTGTAGAAATGGCAGTTCACGGAACTCTCTCAGGGTGGATAAGCCGCTGTCTGTTAACTCGAACGCTAAGTCCGCCCTCAAAACGAAGAATTTTTCAACTTCCGGGACTCGTCGCAGCTGTCCGGCCTCTCTTGGCGGTGCCAATGGAGCTTCAAAGGATGACGATGGAGTGAGGGGAAGAGTTCGAGTAGCTGTCAGATTGCGACCTCGAAATGCTGAGGAAATTGCAGCAGATGCTGATTTTGCAGATTGTGTTGAATTGCAACCAGAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGACTCAGACACTTATGAATTTGATGGAGTGCTAACTGAGTTTGCATCACAAAAACGCGTCTATGAAGTCGTGGCAAAGCCGGTTGTGGAGAGTGTGCTGGATGGGTATAACGGGACAGTAATGGCATACGGACAGACTGGTACTGGTAAAACATATACTCTTGGCCGGATAGGAGAATCAGATATGGCTGATCGAGGAATTATGGTCCGGGCTATGGAAGACATTTTGGCAGATGTTTCCTTTGAAACAGATTCTGTCACAGTTTCCTATTTGCAGCTTTATATGGAGACAATACAGGACCTCCTAAATCCTGCAAATGATAATATTTCGTTTTCAGAAGACCCAAAAACTGGAGATGTTTCGATTCCTGGTGCTTCCCTTGTTGAAATAACGGATCAACAGACCTTTTTGGAACTCCTTAGATTAGGAGAAGTTCACCGCTTTGCTGCAAATACAAAATTAAATACTGAATCTTCACGCAGTCATGCGATTTTGATGATCTATGTAAAACGTTCGGTCAAGGATAGTGATCAGATTCATTCAGGTGAAAGTTACGAAGGGTCCCGTCAGTTTAAATCTTTCAAACCTCCAATTGTTCGAAAGGCAAAGTTAGTAGTCGTTGATCTTGCTGGTTCAGAACGCATCGATAAATCAGGAAGTGAGGGGCATACACTTGAGGAAGCCAAATCGATAAATCTTTCTTTAAGTGCATTGGGGAAGTGCATAAATGCTCTAGCAGAGAATAGTGCGCATATTCCTGTTCGGGATTCAAAGCTTACAAGATTGCTTCGAGATTCCTTTGGGGGCACAGCAAGGACTTCCCTGGTTATTACGATTGGTCCATCACCTCGTCATCGGGGAGAAACAGCAAGTACAATTATGTTTGGGCAGCGAGCGATGAAGGTTGAAAATATGTTAAAAATAAAGGAGGAATTTGATTATAAAAGTCTATCAAGAAGGCTAGACATACAATTGGACAAACTCATCGCTGAACAAGAAAGGCAGAGGAAAGCTTTTGAGGATGAAATTGAAAGAAAAACCATGGCAGCTCAAAATCAGATTTTTGAGGCAGAAAGAAACTATGCAAACGCACTAGAGCTGATATTTATCTTCAGATTTAATCTTAGTTTTGTCATTGAGAAAGCCATTTTGCATTCTCATGGTTGCCATCTGGAAGAATACATCTATAAGGAGAGACTGAAGTATCAGAATGACTATATGGAATCAATAAGGAAGCTTGAAGAAAAATTGATGATGAATCAGCGAAAGCACGAGAATGAAAACACGAAGAATGGGTTCAAAGATGAAAACTCTTACATGGTGTCCACCGTTGAGGGACTAGCCAAGCTAAAAGAGTTGCTTCAGAAAGAAAATATACTACGAAATGCAGCCGAAAAGGAAATTAGCGACCTTAAAAGTCAATTAGAACAACTGAAAAGGTCTGAGGCGTCCGGAAATTCAGAGATCTTAAAGCTTCGCAAGATGCTGGAACACGAGACAAATTCGAAAGAGAAACTCGAAGGGGAAATATCAGTGCTTCGTAGTCAGTTGTTGAACTTGAGTTTGAAAGCTGATGAGACGAGAAGGCGAATCAATAGTGGAGAGCCGGGGAAAGTGCTTGGAGCTCTAGATGCTTTGATGTCTCAAGCTAGGCATACACTCGAGAAAGATTCTGGAAATGGTGATAGAAATTCAATGGAAAAACTCTTTGAACAAGTGGGACTACAGAAAATCCTTTCGTTGTTGGAAGCCGAAGATTCTGACGTGGGAGTCCATGCTGTGAAAGTAGTTGCAAATCTAGCTGCTGAAGAAACAAATCAGCAGAAGATTGTCGAAGCCGGTGGTCTCACGTCGTTGTTAAGACTTCTTAAAATCTCGAAGGATGAGAATATTCATAGAGTAGCTGCCGGTGCTATTGCGAATCTGGCCATGAATGAAACTAACCAGGATCTGATAATGGCTCAAGGCGGCATTGGCTTGTTGTCCATGACGGCTGCTAATGCCGAAGATCCCCAAACCCTTCGAATGGTTGCCGGAGCGATTGCCAATCTGTGTGGAAATGGTAAATTACAGACAAAGCTGAGCAGCGAAGGTGGCATCAAGGCGTTGCTCGGAATGGTCAGTTGCAGACATCTCGAGGTTCTCGCTCAAGTTGCACGTGGAATTGCGAATTTTGCTAAGTGCGAGTCAAGAGCACCTACAAAAGGCAACCCTTATTTTTGCTTGAAGTCTCTCTTGATCGAGGATGGAGGACTTGCCTGGATTATTCAGAATGCCAATAACGAAGCCTCGCCAATTCGACGCCATATCGAACTTGCTCTGTGCCATTTGGCGCAAAATGAAATGAATGCGAAAGACATGATCGGCGGAGGCGCAGTGTGGGAGCTTGTTCGTATAGCTCGAGAATGTTCCCGGGAAGACATAAGAACTCTGGCCCTTCAAGCACTGACTTCTAGCCCTGCTTTCAAAGCCGAAGCAAGGAGACTAATGATCGATTATTATTGA 2832 43.54 MATSGGVSCRNGSSRNSLRVDKPLSVNSNAKSALKTKNFSTSGTRRSCPASLGGANGASKDDDGVRGRVRVAVRLRPRNAEEIAADADFADCVELQPELKRLKLRKNNWDSDTYEFDGVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGRIGESDMADRGIMVRAMEDILADVSFETDSVTVSYLQLYMETIQDLLNPANDNISFSEDPKTGDVSIPGASLVEITDQQTFLELLRLGEVHRFAANTKLNTESSRSHAILMIYVKRSVKDSDQIHSGESYEGSRQFKSFKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHIPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIMFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEQERQRKAFEDEIERKTMAAQNQIFEAERNYANALELIFIFRFNLSFVIEKAILHSHGCHLEEYIYKERLKYQNDYMESIRKLEEKLMMNQRKHENENTKNGFKDENSYMVSTVEGLAKLKELLQKENILRNAAEKEISDLKSQLEQLKRSEASGNSEILKLRKMLEHETNSKEKLEGEISVLRSQLLNLSLKADETRRRINSGEPGKVLGALDALMSQARHTLEKDSGNGDRNSMEKLFEQVGLQKILSLLEAEDSDVGVHAVKVVANLAAEETNQQKIVEAGGLTSLLRLLKISKDENIHRVAAGAIANLAMNETNQDLIMAQGGIGLLSMTAANAEDPQTLRMVAGAIANLCGNGKLQTKLSSEGGIKALLGMVSCRHLEVLAQVARGIANFAKCESRAPTKGNPYFCLKSLLIEDGGLAWIIQNANNEASPIRRHIELALCHLAQNEMNAKDMIGGGAVWELVRIARECSREDIRTLALQALTSSPAFKAEARRLMIDYY 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 597554 604335 - Bda023228.1 Bda06g00057 7639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00057 943 SMART kinesin_4 66 419 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00057 943 CDD KISc 86 409 - -
Bda06g00057 943 PRINTS Kinesin heavy chain signature 144 165 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00057 943 PRINTS Kinesin heavy chain signature 312 330 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00057 943 PRINTS Kinesin heavy chain signature 361 382 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00057 943 Coils Coil 598 632 - -
Bda06g00057 943 SUPERFAMILY ARM repeat 640 926 IPR016024 -
Bda06g00057 943 SMART arm_5 796 836 IPR000225 GO:0005515
Bda06g00057 943 SMART arm_5 754 795 IPR000225 GO:0005515
Bda06g00057 943 SMART arm_5 672 711 IPR000225 GO:0005515
Bda06g00057 943 SMART arm_5 712 753 IPR000225 GO:0005515
Bda06g00057 943 ProSitePatterns Kinesin motor domain signature. 311 322 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bda06g00057 943 ProSiteProfiles Kinesin motor domain profile. 68 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00057 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 445 IPR027417 -
Bda06g00057 943 Gene3D Kinesin motor domain 59 441 IPR036961 -
Bda06g00057 943 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 723 766 IPR000225 GO:0005515
Bda06g00057 943 Coils Coil 556 590 - -
Bda06g00057 943 Pfam Kinesin motor domain 74 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda06g00057 943 MobiDBLite consensus disorder prediction 1 63 - -
Bda06g00057 943 Coils Coil 438 469 - -
Bda06g00057 943 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 682 724 IPR000225 GO:0005515
Bda06g00057 943 PANTHER KINESIN-RELATED 50 934 IPR027640 GO:0003777|GO:0007018
Bda06g00057 943 Pfam Armadillo/beta-catenin-like repeat 715 752 IPR000225 GO:0005515
Bda06g00057 943 Gene3D - 773 941 IPR011989 -
Bda06g00057 943 MobiDBLite consensus disorder prediction 1 49 - -
Bda06g00057 943 PANTHER KINESIN-LIKE PROTEIN KIN-UA 50 934 IPR033291 GO:0008017|GO:0032886|GO:0048364
Bda06g00057 943 Coils Coil 519 539 - -
Bda06g00057 943 Gene3D - 651 772 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00057 - - K10396 qsu:112016186 1305.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00057 Bda09g00070 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00057 Bda-Chr6:597554 Bda13g00422 Bda-Chr13:5160428 7.13E-145 dispersed
Bda15g00393 Bda-Chr15:6847766 Bda06g00057 Bda-Chr6:597554 0 transposed
Bda06g00057 Bda-Chr6:597554 Bda09g00070 Bda-Chr9:1363320 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00057 Bda_Chr06 FPKM 21.001719 20.635389 26.511713 29.189306 29.333315 30.823669 31.7579 33.717216 32.126251