Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00061 ATGGCATTTCTGAGGTCAATTACTTCCTCCACAACAGCCATCGCTGCCTCTGCTATACCTGCCGCCGCCATAGCCGTCTATTATCTCTCTTCTTCTTCACCTTCTTCTTCTCAATCCCAGAAACCAAGCAGTCTCTCCTTCCTGTCCCCTCGTATTTTAAATCTGAATCGTTTGGGTCTCGTCAGAAGTTTGACCCGCCCACCGTCGGCTCTTCAAATGGAAGCGCCAACCTCGGAAGCCGATTCCTCTCGGACGGAGTACATGGTGGATATGAAATGCGAGGGATGTGTTAATTCCGTGAAGAACAAACTGCAGACTGTCGACGGAGTAAAGAGCATTGAAGTGGACCTCAACAATCAGGTGGTTAGAATCCGTGGTTCTACGCCTGTGAAGAACATGACCGAAGCCTTGGAACAGACCGGACGGAAAGCTAGACTAATCGGACAAGGGGTACCCGACGAATTCTTAGTGTCTGCGGCTGTTGCCGAATTCAAAGGTCCAAAAATATTCGGAGTGGTTCGATTAGCTCAGATCAACATGGAATTGGTGAGGATTGAAGCCAACTTTAACGGCTTATCTCCCGGAAAACACGGCTGGTCGATCAATGAATTTGGTGATCTCACAAGAGGTGCTGGCAGCACGGGAAAACCGTTCAATCCTACCGGCCGAGAGCCTGCTAATGAGCCAGTTGGTGACCTGAGAACATTGGATGTCGATGAGAACGGCAACTGTTTTTTCTCCGGGACCAAACAAAAACTGAGGATTTCCGATCTCATTGGACGGTCAATAGCAGTGTACGAAACTGAAGACAGATCCGATCTCGGCATTGCAGCAGCCGTAATTGCAAGGAGTGCCGGAGTTGGAGAGAATTACAAGAAGGTATGCACTTGTGATGGCACAACCATATGGGAATCGACCAATTCCGATTTTGTCACTAGCAAGGTCTGA 948 48.84 MAFLRSITSSTTAIAASAIPAAAIAVYYLSSSSPSSSQSQKPSSLSFLSPRILNLNRLGLVRSLTRPPSALQMEAPTSEADSSRTEYMVDMKCEGCVNSVKNKLQTVDGVKSIEVDLNNQVVRIRGSTPVKNMTEALEQTGRKARLIGQGVPDEFLVSAAVAEFKGPKIFGVVRLAQINMELVRIEANFNGLSPGKHGWSINEFGDLTRGAGSTGKPFNPTGREPANEPVGDLRTLDVDENGNCFFSGTKQKLRISDLIGRSIAVYETEDRSDLGIAAAVIARSAGVGENYKKVCTCDGTTIWESTNSDFVTSKV 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 638677 640438 - Bda023232.1 Bda06g00061 7643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00061 315 PANTHER COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE, CHLOROPLASTIC/CYTOSOLIC 14 315 - -
Bda06g00061 315 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 14 315 IPR024134 -
Bda06g00061 315 Gene3D - 72 152 - -
Bda06g00061 315 CDD HMA 86 145 IPR006121 GO:0046872
Bda06g00061 315 Pfam Heavy-metal-associated domain 87 143 IPR006121 GO:0046872
Bda06g00061 315 SUPERFAMILY Cu,Zn superoxide dismutase-like 147 307 IPR036423 GO:0006801|GO:0046872
Bda06g00061 315 Gene3D Superoxide dismutase, copper/zinc binding domain 154 283 IPR036423 GO:0006801|GO:0046872
Bda06g00061 315 Pfam Copper/zinc superoxide dismutase (SODC) 171 272 IPR001424 GO:0006801|GO:0046872
Bda06g00061 315 ProSiteProfiles Heavy-metal-associated domain profile. 83 146 IPR006121 GO:0046872
Bda06g00061 315 SUPERFAMILY HMA, heavy metal-associated domain 85 147 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00061 K04569 CCS; copper chaperone for superoxide dismutase - mnt:21405934 414.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00061 Bda-Chr6:638677 Bda12g00393 Bda-Chr12:4665374 5.15E-10 dispersed
Bda06g00061 Bda-Chr6:638677 Bda08g01032 Bda-Chr8:21379098 1.23E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g438 . Blo03g00183 Bda06g00061 . . Bpe07g00137 . . . . . . . . . . . Bhi11g00229 . . . . . . Cla10g00318 Cam10g0333 Cec10g0347 Cco10g0339 Clacu10g0330 Cmu10g1170 Cre10g0580 . . Cone6ag0730 Cone9ag0734 Lsi07g01367 . . Cme06g02652 . . . . . . . Bma12g00113 . . . Cma06g00735 . Car06g00654 . Cpe08g00784 . . . . . . . . . . . . . . . . Csa03g00341 Chy06g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00061 Bda_Chr06 FPKM 3.338583 4.479338 2.211653 4.342043 6.227626 3.739132 6.036623 2.459602 2.845748