Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00062 ATGGGGAGGTTGAACTTCATCTTCATCTTGTTTATTTTTGCCGTCATGGGAAAATCTATGCTTGTGGGAGCCGTCTTTCAACCGAGCCCTTGGACACCAGCTCACGCCACCTTTTACGGGGATGAAACGGCCTCTGAGACAATGGGAGGGGCATGCGGGTACGGAAACTTGTTCGTGACTGGATATGGAACAGACACGGCTGCATTGAGCTCGACGTTGTTCAATAATGGATATGCATGTGGGACGTGTTACCAAATAAAATGTTTTCAAGCAAAGGCATGCTACACCAACATAGCGTACACCACCGTCACGGCTACCAACCTTTGTCCTCCAAATTGGTCCGAAGATTCCAATGCAGGCGGATGGTGCAACCCTCCCAGAGTTCACTTTGACATGTCTAAGCCCGCCTTCATGAAAATCGCTGACTGGAAAGCCGGCATTGTCCCAGTCCTCTACCGAAGGATACCATGTGCGAGGAGTGGGGGTTTGAAATTCAACTTTCAGGGGAATGGATATTGGCTTCTCGTGTACGTGATGAACGTCGGAGGAGGGGGAGATTTGATGGCAATGCAAGTGAAAGGAAGCAAGACAGGGTGGATAAGCATGAGCCACAATTGGGGAGCTTCATACCAAGCATTTGCCACATTGGGTGGTCAATCTCTATCTTTTAGGCTCACTTCCTACACTTCCAAAGAGACTCTTTATGCTTGGAATGTTGCTCCTTCTAATTGGCAAGTAGGGTTGACCTACCAATCTAATCTTAATTTCCACTGA 774 48.06 MGRLNFIFILFIFAVMGKSMLVGAVFQPSPWTPAHATFYGDETASETMGGACGYGNLFVTGYGTDTAALSSTLFNNGYACGTCYQIKCFQAKACYTNIAYTTVTATNLCPPNWSEDSNAGGWCNPPRVHFDMSKPAFMKIADWKAGIVPVLYRRIPCARSGGLKFNFQGNGYWLLVYVMNVGGGGDLMAMQVKGSKTGWISMSHNWGASYQAFATLGGQSLSFRLTSYTSKETLYAWNVAPSNWQVGLTYQSNLNFH 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 645092 646104 - Bda023233.1 Bda06g00062 7644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00062 257 Gene3D - 18 158 IPR036908 -
Bda06g00062 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Bda06g00062 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Bda06g00062 257 Pfam Lytic transglycolase 66 152 IPR009009 -
Bda06g00062 257 Gene3D - 163 257 IPR036749 -
Bda06g00062 257 SMART dpbb_1 66 152 IPR007112 -
Bda06g00062 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Bda06g00062 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Bda06g00062 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Bda06g00062 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bda06g00062 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Bda06g00062 257 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Bda06g00062 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 162 IPR007112 -
Bda06g00062 257 PANTHER EXPANSIN 8 257 - -
Bda06g00062 257 PANTHER EXPANSIN-A15 8 257 IPR002963 GO:0009664
Bda06g00062 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Bda06g00062 257 SUPERFAMILY Barwin-like endoglucanases 30 180 IPR036908 -
Bda06g00062 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bda06g00062 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bda06g00062 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Bda06g00062 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bda06g00062 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Bda06g00062 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bda06g00062 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00062 Bda08g00545 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00062 Bda-Chr6:645092 Bda15g00354 Bda-Chr15:6419088 2.39E-93 dispersed
Bda15g00903 Bda-Chr15:14795123 Bda06g00062 Bda-Chr6:645092 2.29E-35 dispersed
Bda15g00905 Bda-Chr15:14858691 Bda06g00062 Bda-Chr6:645092 4.85E-38 dispersed
Bda06g00062 Bda-Chr6:645092 Bda08g00545 Bda-Chr8:5510248 1.36E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00062 - - qsu:111989333 446.047