Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00071 ATGGCGTCGAGTTCTTCTTCGAGAAAACACTCTCTTTACAGAGGCATTCGTTGCAGAAGCGGGAAATGGGTTTCGGAAATCCGAGAGCCACGTAAAACGAATCGAATTTGGCTCGGGACCTTCCCCTCCCCGGAAATGGCTGCTGCCGCACACGACGTTGCTGCCTTAGCGCTCAGAGGAAACGACGCCACACTTAACTTCCCGGCGCTGGTTGGTTCTTATCCTGTTCCGGCTTCTACATCACCGGCCGATATCAGAGCGGCCGCCTTAGCCGCCGCGACGCTGATGAAAATGAGTTCGAAAGATGATGATCGGTCAGAGGAGCAGCTTAGTAAACTGAGCGATGAATTTCTCGACGAGGAGGAGATTTTCGACATGCCCAATTTGCTAGTGGACATGGCGGGAGGAATGCTAATGTCGCCGCCGAGAATGAACTTGCCGCCGGACCACGAGCCAGCTGGGTTTTCCGATGGACAAGAGCGTTTATGGAGTCATTTTTGA 501 53.29 MASSSSSRKHSLYRGIRCRSGKWVSEIREPRKTNRIWLGTFPSPEMAAAAHDVAALALRGNDATLNFPALVGSYPVPASTSPADIRAAALAAATLMKMSSKDDDRSEEQLSKLSDEFLDEEEIFDMPNLLVDMAGGMLMSPPRMNLPPDHEPAGFSDGQERLWSHF 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 732342 732842 - Bda023242.1 Bda06g00071 7653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00071 166 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Bda06g00071 166 PANTHER ETHYLENE RESPONSE FACTOR 1 166 - -
Bda06g00071 166 PRINTS Ethylene responsive element binding protein signature 50 70 IPR001471 GO:0003700|GO:0006355
Bda06g00071 166 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Bda06g00071 166 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Bda06g00071 166 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Bda06g00071 166 Pfam AP2 domain 12 60 IPR001471 GO:0003700|GO:0006355
Bda06g00071 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 166 - -
Bda06g00071 166 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Bda06g00071 166 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00071 Bda-Chr6:732342 Bda07g01877 Bda-Chr7:36182782 8.38E-42 dispersed
Bda06g00071 Bda-Chr6:732342 Bda08g00532 Bda-Chr8:5326882 1.86E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15970 PF00847 AP2 4.10E-10 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00071 - - jre:108990846 212.231