Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00076 ATGGGAAAAGCATCGAAATGGTTCCGCGGTCTTCTCGGTTTGAAGAAATCAGACCAACAAGTGGAGACCACGGCGGGGAAACCTTCCAAAGACAAGCGCAGTTGGAGCTTCGTGAAGTCGTACCGAGAGAAAGACACCCGTAACAACCATAGCCATGGGGGCTCAGTTAAGCACAGAGACCAGTCGACAACGACTACGCGGAAAGATATTGCGATACGATCGATCGAGTCGGCTGAACGCGTTGATCCAGACAAGCACGCCATCGCTGTTGCTGCAGCCACTGCTGCGGTCGCTGAAGCGGCCGTCGCGGCTGCTCATGCGGCGGCCGCGGTTGTGAGGCTTACGAACAGTGGGAGGTGCGGAAACGGGTCGGGGCACGTTTGTGTTAATAATCAAATTCGTGAAGTATGGGCGGCCGTGAAAATTCAAGCGGCATTTCGAGGATGCTTGAATAATTGCTTATATGGGCGAATGCTTATGTGTATTGGTGCGAAGGCAAGGAAAGCATTACGAGCACTGAAGGGATTAGTGAGACTTCAGGCTCTCGTTAGAGGTCACATTGAGAGGAAGCGAACGTCTGAGTGGCTTCTTAGGATGCAGGCAATCTTACGGGCCCAAGCACGAGCTCGTGCTGGGCGAGCTCAAATGCCTGAATTATCACAATCTTCTAGCAAGTCTTCTCACTTTCATCCACCTGGTCCTGCTACTCCTGAGAAATTTGAACACGATGTTCGAACTAAGAGTTTAAAATTTGACCAGCCTTCGATGCTCAGGTCGCTTTCAAATTTCGTCCTCATGGTCATTCAAGGCTGTCCTACGATGCCCGCTTATTGGAGACCCGGTGATAAAAGATGGACGTTGATCAAAACCACGGAAATAGCTTTTCTAGATGCTGTTTTCTACCAAGACAAGTGTTATTTTTTAACTTCAAGGAAAAAGATTTTGGTCACTGATTTTGGAAGATCTAATCCAACGACAGCAGAGTTTATAACAGAGTTCTCAGAAGACCTAATTGAAGGGAATTTATTCGAAGCTTTTTATTTGGTGATTCTGGAAGGATCTCTGCTGCTGGTTTCTAGGCAAGTGTGGGAGTGTTTTCGTCATGAAAAACAATTCCAGGAGAGGCCGTACGAAACCTTATATTTTCAAGTTTTTAAGCTTGATTTCAAGAGTTTGAGATGGAAGGAGTTGAGAAGCTTGGGAAACTGGAGTCTGTTTTTGGGTCAAAATTCTACCATAGCTCTAAATGCATCGGTGGTTAAAGGATGTATACCTAATTCTATTTACTTTACAAACGATGACACACATTTTTCTTATTTCGTCCGAAAAGGAGCAGGTTTCGATATGGGGATATTTAACATGACTGACCAGACGATAGGACCACTCATAGAAGGATCATGGCGCAACCGGGTCTCACCCCCCATATTTGTCGATCCGACCTTCTGA 1446 46.4 MGKASKWFRGLLGLKKSDQQVETTAGKPSKDKRSWSFVKSYREKDTRNNHSHGGSVKHRDQSTTTTRKDIAIRSIESAERVDPDKHAIAVAAATAAVAEAAVAAAHAAAAVVRLTNSGRCGNGSGHVCVNNQIREVWAAVKIQAAFRGCLNNCLYGRMLMCIGAKARKALRALKGLVRLQALVRGHIERKRTSEWLLRMQAILRAQARARAGRAQMPELSQSSSKSSHFHPPGPATPEKFEHDVRTKSLKFDQPSMLRSLSNFVLMVIQGCPTMPAYWRPGDKRWTLIKTTEIAFLDAVFYQDKCYFLTSRKKILVTDFGRSNPTTAEFITEFSEDLIEGNLFEAFYLVILEGSLLLVSRQVWECFRHEKQFQERPYETLYFQVFKLDFKSLRWKELRSLGNWSLFLGQNSTIALNASVVKGCIPNSIYFTNDDTHFSYFVRKGAGFDMGIFNMTDQTIGPLIEGSWRNRVSPPIFVDPTF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 756668 764878 + Bda023247.1 Bda06g00076 7658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00076 481 MobiDBLite consensus disorder prediction 25 70 - -
Bda06g00076 481 MobiDBLite consensus disorder prediction 214 243 - -
Bda06g00076 481 PANTHER CALMODULIN BINDING PROTEIN IQD22 1 261 - -
Bda06g00076 481 MobiDBLite consensus disorder prediction 216 230 - -
Bda06g00076 481 ProSiteProfiles IQ motif profile. 174 201 IPR000048 GO:0005515
Bda06g00076 481 ProSiteProfiles IQ motif profile. 138 164 IPR000048 GO:0005515
Bda06g00076 481 Pfam Protein of unknown function (DUF295) 396 454 IPR005174 -
Bda06g00076 481 PANTHER IQ-DOMAIN 5-RELATED 1 261 - -
Bda06g00076 481 MobiDBLite consensus disorder prediction 18 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00076 - - - qsu:111999477 239.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00076 Bda-Chr6:756668 Bda06g00094 Bda-Chr6:1019302 2.21E-100 dispersed
Bda06g00076 Bda-Chr6:756668 Bda06g00047 Bda-Chr6:514335 5.52E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g375 . . Bda06g00076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007128 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00076 Bda_Chr06 FPKM 0.0 0.0 1.119708 0.0 1.981257 1.856216 0.0 0.742682 2.376875