Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00083 ATGTTTAAGTCGGCTAGGTGGAGGGGCGATAAGAACAAGATCAAGGTCGACTTTAAGTTGCAGTTCTCTGTGACTCAGGTTTCACAACTAAGTGCCGATACATTGACCATATCTGTAGCTTCCGGAGATTTGAGTAAGCCAAGTTTGAAATCTGAGAAGGCTCCAGTTCGAGATGGAAGCTGTCACTGGGAAAATCCGGTCTACTTAATTGTAAAATTTGACAGAGATTCGAAAACTGGAAAGATTAATGCAAAAATCATCAAGTTTCTTGTTTCAACAGGGTTGACGAAAGCTGGTGTTCTTGGGGAAGTTTTTATCGACTTTTCTGAGTATGCTGAGGCCACAAAACCTTCTAATCTCTCTCTTCCCCTCAAGAATTCAAATTCTTCCGCAATTTTACATGTTTTTCTGCAGAGATTGCAGCCGAATGGTAATCAAAGGTATAAAACCACAGATGGATCCCGATTCTTCTCTAGAAATGTCAGTTTTGAAGTTCTTTTCAACAAAAATGTTTATTCGTCTTTGTTCTTTGACGAATCAATGGATAGATCTTCACGAAATGTCAAACTAAATGGCGATCACAGAGAGTCGAGTATATCTGACATTACATTATCAAGCTCAGAGAGCAGCTCTGGCTTTGATACTCCCCACGAAGTGGAATCCAGAAGCAATAAATTCGATCAGAACCCTCCTGGCTTATTGGTGCTTCAGAAATCATCCGAACTTGCCTCATCAAAAAATAATGAAGAGCACCAGAAAGAGGAATGGGCGTGGTGTCTAAGCAACTCAGCAGAAAGCGTCCTCCCAAAAGAAAGTCCCGAAAAGGAAAATTTTGAAATTGAAAGTCTGAAGGCTGATCTTGCCATTTTTGCTCGACGGGCTGATGTATCTGAGATGGAGTTACAGACCCTTCGGAAACATATTGTGAAAGAGAGCAAGAAAGGGCAAGATTTGTCTAGAGAGATTGTTAGCTTGAAAGAGGAGAGAGACTTACTCAAGTTAGAATGTGAAAAACTCAAGGCTTTTCAAAACTCGTTACCGGTGGATGGAGGAGGAGACTTACAAAAAATTCTTGAAGAAATGAGACGAGAGATAAACTATGAGAAGGACTTGAATGCTTATCTAAGGATACAGCTGCAAAAGACACAAGAATCTAACAATGAGTTAATTCTAGCCGTGCAAGACCTCGAGCATATGCTGGAGAAAAAAAATGCTGAAAATGTAGATGAGCTCAATAAGATTGCCTTTTCAAAAATCAAGGCAGAGGAGGACGAAGAGCAAAAAGCACTGGAAGATCTTGTAAAGGGGCACATTGATGGAAGTGAAACATTTGTGTTGGAGCAGAAACTTATAGATCTCTGCGGTGAAATAGAGATTTGCAGGAAAGACAAGGATGAGCTAGAGATGCAAATGGAACAGCTTGCACTTGACTATGAAATAATGAAACAGGAAAACCACGAATTATCATATAGATTAGAGCAAAGTCAGATTCAAGAACAATTGAAGCTTCAGTATGAATGCCCGTCTTCCTTGGACACTATTCACGAGCTTGAAATGCACATTGTAAGCTTGGAGAATGAACTCAAGAAGCAGTCTATTGACTTCTCTGATTCTTTGACAACCATTAAGGAGTTGGAATCTCATATTATCATCCTCGAAGAAGAACTTAAGATACGAATAGATGGGTTCGAAGCTGATATAGAAGCTCTTACTTTTGCCAAAGTTGAGCAGGAAAAACAAACCATTAGAGCAGAAGAAGCCTTGAGAAAGACAATGAGGAAAAATGCTAATACAGCTGAAAAGGTTCAAGAAGAATTTAGGAGGCTCTCGATGCAGATGATGTCTATGTTTGAGGCAAATGAGAAAGCAGCCTTGAAGGCGCTCTCGGAGGCCAGTGACCTACGTCAGCAGAGACGTGAGTTAGAAGAATTACTTGAGAAAGCTAATGAAGAGCTTCAGTCATTGAGGGATGATTATGAGGAAAAAATAGCCGAGCTTTTTTGCCAGTTAGAAAGTAACAAGACCCAGTTTGCACAAATGTCCGAAGAACTTGACACGAAGTCAAAGCAAGTTGACTTCCAAAGAAAACATGAGGAAGAAGTGTGCCGATCTTTATATCTGGAGATCCAGACGCACAAGTATGCCATCGAATGCCTGAAAATTGAGAATGAAAAACTTATTAAGCAAGAAGAGTATTTGAGAGTTCAGTTTGGACAAATGGAGAAATCAGTAAATGAAACTGAAAAGCTGATCCAGGAGGGTAATGAGAACAGAAACGAGCTAGTGATTACAATTGCGCTGGTGAAGAAAGAAGCCGATAAGTCAATGATGAGTCAAAAGAAAAGGGAAAAAGTGATTGAACTTATACTGCTACAATCTGAGTTTGAAACTCTCAAACTTCACTGTAATGACGAGATGGAGAAACCTAGAAAGCATGTAGTCCAATTAAAAAGTGACGCATTACGCAGTGTTGAGAAAAGGCAAGGGAATAGCAATGGGCATGCAGTAACTTCTCATGGAAACAACACTAGTCAAAAAACAGATAACTATGCATTGGACAATCAAGTCTCCAAAGAGGTTGTGAGTCTGAGGGGGAGCATTGAATTACTTGAGGAACAAACAGAGTCGAGGGAAAATGCTCTAGAAGCATCAACAAATTCATTTTTGGACGAGGAGAGGGATCTTCATGATAAGTTCAAAGAGTTAGCTAGCAGAGCTAAAGAACTCGATCCTGTCTGCGTGATTGGAAAGAGCGATATAGCTCGTCCAGTTTTTTCCACCAGTCAAAATAGACTTTTCATGGGGATGAATCTGCCTAAATTCGAAATCGAAGTTGCGTCCGAGAGAGCACTTAAAATAAACAGTACCCTTGATAATCAATTAACAACTGAAGTGGGGGTGTTTATTAGAAGAATCAAATCAATGGAAAGCGAACTTAAGGAAATGCAAGTGAGATACTCAGAGATAAGCCTCAAATTTGCAGAGGTAGAAGGTGAAAGACAAAAGCTTGTGATGACTCTAAGAAACCTCAAGAATTCAAAAAAGGATTTGTAA 3054 39.82 MFKSARWRGDKNKIKVDFKLQFSVTQVSQLSADTLTISVASGDLSKPSLKSEKAPVRDGSCHWENPVYLIVKFDRDSKTGKINAKIIKFLVSTGLTKAGVLGEVFIDFSEYAEATKPSNLSLPLKNSNSSAILHVFLQRLQPNGNQRYKTTDGSRFFSRNVSFEVLFNKNVYSSLFFDESMDRSSRNVKLNGDHRESSISDITLSSSESSSGFDTPHEVESRSNKFDQNPPGLLVLQKSSELASSKNNEEHQKEEWAWCLSNSAESVLPKESPEKENFEIESLKADLAIFARRADVSEMELQTLRKHIVKESKKGQDLSREIVSLKEERDLLKLECEKLKAFQNSLPVDGGGDLQKILEEMRREINYEKDLNAYLRIQLQKTQESNNELILAVQDLEHMLEKKNAENVDELNKIAFSKIKAEEDEEQKALEDLVKGHIDGSETFVLEQKLIDLCGEIEICRKDKDELEMQMEQLALDYEIMKQENHELSYRLEQSQIQEQLKLQYECPSSLDTIHELEMHIVSLENELKKQSIDFSDSLTTIKELESHIIILEEELKIRIDGFEADIEALTFAKVEQEKQTIRAEEALRKTMRKNANTAEKVQEEFRRLSMQMMSMFEANEKAALKALSEASDLRQQRRELEELLEKANEELQSLRDDYEEKIAELFCQLESNKTQFAQMSEELDTKSKQVDFQRKHEEEVCRSLYLEIQTHKYAIECLKIENEKLIKQEEYLRVQFGQMEKSVNETEKLIQEGNENRNELVITIALVKKEADKSMMSQKKREKVIELILLQSEFETLKLHCNDEMEKPRKHVVQLKSDALRSVEKRQGNSNGHAVTSHGNNTSQKTDNYALDNQVSKEVVSLRGSIELLEEQTESRENALEASTNSFLDEERDLHDKFKELASRAKELDPVCVIGKSDIARPVFSTSQNRLFMGMNLPKFEIEVASERALKINSTLDNQLTTEVGVFIRRIKSMESELKEMQVRYSEISLKFAEVEGERQKLVMTLRNLKNSKKDL 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 824772 829318 + Bda023256.1 Bda06g00083 7665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00083 1017 Coils Coil 624 676 - -
Bda06g00083 1017 MobiDBLite consensus disorder prediction 199 231 - -
Bda06g00083 1017 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Bda06g00083 1017 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 139 IPR019448 -
Bda06g00083 1017 Coils Coil 315 335 - -
Bda06g00083 1017 Coils Coil 457 484 - -
Bda06g00083 1017 MobiDBLite consensus disorder prediction 824 848 - -
Bda06g00083 1017 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1015 - -
Bda06g00083 1017 Coils Coil 972 992 - -
Bda06g00083 1017 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1015 - -
Bda06g00083 1017 Coils Coil 379 413 - -
Bda06g00083 1017 Coils Coil 514 534 - -
Bda06g00083 1017 MobiDBLite consensus disorder prediction 825 848 - -
Bda06g00083 1017 MobiDBLite consensus disorder prediction 199 217 - -
Bda06g00083 1017 Coils Coil 1000 1017 - -
Bda06g00083 1017 Coils Coil 575 595 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00083 - - - zju:107429960 897.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01700 Bda-Chr3:56419615 Bda06g00083 Bda-Chr6:824772 1.51E-24 dispersed
Bda06g00083 Bda-Chr6:824772 Bda15g00731 Bda-Chr15:10770287 2.47E-13 dispersed
Bda07g00477 Bda-Chr7:6032621 Bda06g00083 Bda-Chr6:824772 1.94E-09 transposed
Bda06g00083 Bda-Chr6:824772 Bda08g00524 Bda-Chr8:5260090 4.11E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g345 Blo02g01105 Blo03g00203 Bda06g00083 . Bpe05g00637 Bpe07g00115 . Bma14g00613 . Cmo16g00637 Cma02g01064 Cma15g01215 Car02g00807 Car15g01096 . Cpe14g00498 Cpe05g00319 . . . . . . . Cla07g00764 Cam07g0819 Cec07g0878 Cco07g0854 Clacu07g0797 Cmu07g0804 Cre07g1159 Cone8ag0317 Cone12ag0316 . Cone9ag0766 . Csa05g00299 Chy09g01206 . . . . . . . Bma05g00813 Bma12g00090 . Cmo02g01506 Cmo15g01279 Cma06g00414 Cma16g00588 . . . Cpe13g00164 Bhi12g00228 . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 Lsi09g00280 . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001416 2 3 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 5 4 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00083 Bda_Chr06 FPKM 9.768497 10.825168 10.898551 11.056762 23.512115 28.700272 23.603067 19.569567 19.308758