Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00084 ATGAAACATTTTGTTTCATTTCAGCTTCTATGTCTAATTTCATCCATTCTGCTTGTAACTTGCGATTCCTTAGCTTCAAGTGAAGTCTCTGCTCTTACAACTTTCAAGGAAGGAATCTATGAAGATCCCCAGCTATTTTTATCTGACTGGAATAACTTAGCTGGAGACCCTTGTGATTGGTCGGGCCTATCATGCTCTCAAGAACGAGACCATGTTCTAAAGATTTACATTTCCGGGGCATCTTTGCGAGGATTTCTCGTTCCAGAATTGGGTCAACTGAACTTCTTGCAAGAATTAATTTTGCATGCCAACAATCTGATCGGCGTAATTCCGAAGGAAATTGGATTGTTAAGAAACCTCAGGATATTGGATTTAGGGGCGAATCAACTCTCCGGTCCGATTCCTGCAGAGATTGGAAATTTAATCAACATTATGAAAATAAATCTTCAATCTAATGGACTAACTGGCAGGCTACCTCCACAGTTTGGAAATTTGATATATTTGGAAGAACTTAGATTGGACAGAAATAAGCTTCAGGGAACTGTGCCTGCTGGTGGAAATGTCGATTCCACATCAAACTTACGTGGAATATATGCTTCGGGTTCAAATTTGTCTGGCCTCTGCCGTTCACCTCAGCTAAAGTTTGTCGATTTCTCGTACAACTTCTTCGTTGGAAGCATACACAAGTGTTTGCAGTATCTTCCAAGGTCAAGTTTCCAAGGAAACTGCCTTCATAATGTGGATGCGAAACAGAGACCGGTCGACCAATGTGGTATTAAAAGACAGGCCAGAGGCAATCCGAAACACCGACCTTCTGACTCTAACCATGTATCGAAGCATCAATCGTCATCAAAGCCCGTCTGGCTTTTGGCTCTTGAAATTGTGACTGGAATTCTTGTAGGTTCGCTCTTCATCATCGTCATGGTCATTTCTTTGAAGAAATTCAATACCAAGTCCTCCGTTATAATCCCTTGGGGGTCAAGAAAATCACCGAGTGGGAAGGACCATGTCGTAATTTGCATAGATTCTGAAATTTTGAAAGATGTGAGGAAATTTAGCAGACAAGAGCTTGAAGAAGCCTGCGAAGATTTCAGCAATATCATTGGTTCTTCGTCGGATAGCTTGGTCTACAAGGGCATTTTGAAAGGCGGGGCTGAAATTGCAGTTATCTCACTGTCCATAAAAGAAGAGCACTGGACCGGCTATCTCGAACTATATTTCACGAGAGAGGTGGCCGATTTGGCAAGGTTGAATCACGAGAATACCGGAAAATTACTCGGTTTTTGTACGGAGAGCATTCCCTTAACGAGAATGCTGGTTTTCGAATACGCTTCAAATGGGACGTTATATGAACACCTCCATTGCATGCCTAAAGGAGAAGGATGCCAATTAACTTGGACGAGGCGAATGAAAATAATATTAGGCATCGCGAGGGGGCTCAAGTATCTTCACATTGAATTTCAACCTCCGTTTAGCATATCGGAGTTGAACTCTGGCACCGTCTATCTCAGGGACGATTTTTCCCCAAAGTTGGTAGACTTTGAGTATTGGAAGACAATTCTTTTGAGATCTGAAAGAACCTCGAGCATTGTTGGCAGCCGAGGCAGTGTATGCGTTCTTCCAAATTCTCTTGAAGCGCGGAATCTCGATGTCAGAGGAAACATCTATTCTTTCGGCATCCTTTTGCTCGAAATAGTCAGCGGCCGACCTCCGTACTGCAAAGACAACGGCTGCTTGGTAGATTGGGCTAAGGATTATCTTGAAGTGCCTGAAGTGATGGCTTATGTGGTGGATCCTAAATTGAAGCACTTCAGATATGAAGACCTTAAAGTAATTTGTGAAGTGGTAAGTCTTTGTATATATCCTGATTCTACCGAGAAGCTAATTTCGATGAAAGATTTGTGTGATATGTTAGAGTCCGGGATCGACATTCCGGTATCAATCGAGTCGAAATCATCTTCTCTGGCATGGGCCGAGCTTGCCCTTTTGTCCTGA 1995 42.76 MKHFVSFQLLCLISSILLVTCDSLASSEVSALTTFKEGIYEDPQLFLSDWNNLAGDPCDWSGLSCSQERDHVLKIYISGASLRGFLVPELGQLNFLQELILHANNLIGVIPKEIGLLRNLRILDLGANQLSGPIPAEIGNLINIMKINLQSNGLTGRLPPQFGNLIYLEELRLDRNKLQGTVPAGGNVDSTSNLRGIYASGSNLSGLCRSPQLKFVDFSYNFFVGSIHKCLQYLPRSSFQGNCLHNVDAKQRPVDQCGIKRQARGNPKHRPSDSNHVSKHQSSSKPVWLLALEIVTGILVGSLFIIVMVISLKKFNTKSSVIIPWGSRKSPSGKDHVVICIDSEILKDVRKFSRQELEEACEDFSNIIGSSSDSLVYKGILKGGAEIAVISLSIKEEHWTGYLELYFTREVADLARLNHENTGKLLGFCTESIPLTRMLVFEYASNGTLYEHLHCMPKGEGCQLTWTRRMKIILGIARGLKYLHIEFQPPFSISELNSGTVYLRDDFSPKLVDFEYWKTILLRSERTSSIVGSRGSVCVLPNSLEARNLDVRGNIYSFGILLLEIVSGRPPYCKDNGCLVDWAKDYLEVPEVMAYVVDPKLKHFRYEDLKVICEVVSLCIYPDSTEKLISMKDLCDMLESGIDIPVSIESKSSSLAWAELALLS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 836131 839875 + Bda023257.1 Bda06g00084 7666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00084 664 Pfam Protein tyrosine and serine/threonine kinase 365 573 IPR001245 GO:0004672|GO:0006468
Bda06g00084 664 PANTHER PROTEIN MALE DISCOVERER 2 2 662 - -
Bda06g00084 664 SUPERFAMILY Protein kinase-like (PK-like) 347 638 IPR011009 -
Bda06g00084 664 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Bda06g00084 664 ProSiteProfiles Protein kinase domain profile. 362 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00084 664 SUPERFAMILY L domain-like 27 235 - -
Bda06g00084 664 Gene3D Transferase(Phosphotransferase) domain 1 444 649 - -
Bda06g00084 664 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 662 - -
Bda06g00084 664 Gene3D Ribonuclease Inhibitor 25 251 IPR032675 -
Bda06g00084 664 MobiDBLite consensus disorder prediction 261 280 - -
Bda06g00084 664 Gene3D Phosphorylase Kinase; domain 1 340 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00084 - - - pvy:116137158 928.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00084 Bda-Chr6:836131 Bda15g00312 Bda-Chr15:5958760 4.13E-81 dispersed
Bda03g01111 Bda-Chr3:11359984 Bda06g00084 Bda-Chr6:836131 2.07E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69654 PF07714 PK_Tyr_Ser-Thr 1.00E-15 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00084 Bda_Chr06 FPKM 0.402863 0.524036 0.297507 0.363595 0.046099 0.027491 0.201873 0.427514 0.441259