Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00086 ATGGAAGAAGATAGTCAAATCAAGAAAGAAAGTTATGCTTCTAATATTCACCTCATACGAGAATCGCATTTTCGCATCAAGTCTTTCATACATCAAACTCCAGTGCTGTCCTCCGAATCCATTAATGCGGCTTCAGGAAAGCAACTATTTTTTAAATGTGAATGTTTTCAAAAGGGTGGATCATTTAAATTTAGAGGAGCCTGCAATGCTGTATTTTCGCTAGACGATCATGAGGCTGCTAAAGGGGTTGTAACTCACAGCAGTGGTAACCATGCAGCAGCATTAGCTCTGGCTGCGAAACTTCGAGGAATTCCTGCCTACGTTGTCATTCCAAAAAATGCTCCGAAATGCAAAGTTGAAAATGTGATCCGATATGGTGGACAGATTATTTGGAGCGAGCCGACGATGCAGTCTAGGGAGAGTGCTGCTTCCAAGGTTATGGAAGAAACTGGTGCAATTTTCTTACCTCCTTTCAATGATCAACGCATAATAAGTGGGCAGGGCACCATTGTGTTAGAGCTTTTAGAGCAAGTGCAACAAATCGACTCACTAATCGTTCCCATTAGTGGAGGTGGTTTAATATCAGGAGTAGCCCTGGCTGCAAAGTCTATCAACCCTGCTATTCGTGTTTTGGCCGCCGAACCCCGGGGAGCTAACGATGCAGCACAGTCGAAAGAGGCGGGTAGAATAATCATTTTGCCCGAGACTAACACCATAGCCGATGGTCTTCGAGCTTACCTCGGTGATCTTACATGGCCAATTGTTCGAGATCTTGTTGATGATGTAATAACTGTGGAAGACAAGGATATAATTGAAGCCATGAGACTCTGCTTCGAGATTCTAAAGATTGTTGTCGAACCCAGTGGAGTGATCGGCCTTGCAGCTGTTATGTCAGATAATTTCAAGAAACACCCGATTTGGAAGAATTGCAACAGAATAGGAATTATATTTTCTGGGGGTAATGTTGATCTTGGAGTCTTGTGGGATTCGTTCAAAATTTGA 1002 43.11 MEEDSQIKKESYASNIHLIRESHFRIKSFIHQTPVLSSESINAASGKQLFFKCECFQKGGSFKFRGACNAVFSLDDHEAAKGVVTHSSGNHAAALALAAKLRGIPAYVVIPKNAPKCKVENVIRYGGQIIWSEPTMQSRESAASKVMEETGAIFLPPFNDQRIISGQGTIVLELLEQVQQIDSLIVPISGGGLISGVALAAKSINPAIRVLAAEPRGANDAAQSKEAGRIIILPETNTIADGLRAYLGDLTWPIVRDLVDDVITVEDKDIIEAMRLCFEILKIVVEPSGVIGLAAVMSDNFKKHPIWKNCNRIGIIFSGGNVDLGVLWDSFKI 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 841375 843194 - Bda023259.1 Bda06g00086 7668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00086 333 Pfam Pyridoxal-phosphate dependent enzyme 28 318 IPR001926 -
Bda06g00086 333 Gene3D - 25 323 IPR036052 -
Bda06g00086 333 Gene3D - 62 158 IPR036052 -
Bda06g00086 333 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 19 325 IPR036052 -
Bda06g00086 333 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 14 331 - -
Bda06g00086 333 PANTHER - 14 331 - -
Bda06g00086 333 CDD Thr-dehyd 19 323 - -
Bda06g00086 333 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 IPR000634 GO:0006520|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00086 K12235 SRR; serine racemase [EC:5.1.1.18] - fve:101295227 518.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00086 Bda-Chr6:841375 Bda09g00230 Bda-Chr9:3085712 1.66E-39 dispersed
Bda06g00086 Bda-Chr6:841375 Bda13g00764 Bda-Chr13:9212854 4.66E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g337 . Blo03g00210 Bda06g00086 . . Bpe07g00113 . . . . . . . . . . Cpe05g00324 . . . . . . . . . . . . . . . . . Cone9ag0772 . Csa05g00294 Chy09g01212 . . . . . . . . Bma12g00086 . . . . . . . . . Bhi12g00237 . . . . . . . . . . . . . Lsi09g00273 . . Cme09g01749
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00086 Bda_Chr06 FPKM 15.008509 18.276402 6.972689 7.638623 24.406355 23.747499 25.262554 1.480295 1.373197