Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00113 ATGACTGCTCCAAGCAACGGTTCAAATCGAATGGAAAGCAATCAACTTGCAGAAGGCTCAATTATTGGTGAGGGGAGAAGTAGAGGAGCTTCTCAAGCACAAAGCTGGCAGTTGATAGATGATGAGATTAGTAACTGTGCCCATCAGTCCATAAATTCTAGTGATTGTATATCTCAAACCTTTGTAGAGCCTGAAAAAGTCAACTCCGATGTGAACAGAGAAAAAGTCAAAAACCATTTGCCAAATCAAGAGGATAATCGCCAGAAACTAAACCTGTGGGCACCACGGAAGGATGATCTACATTATCGACGGATTCTCAGTAACCTTTTTAACAGCTCAAACGGGTCGATTTTAGGATCGCTAGCTCGTATTTGTCGAAGAGATTCGAGCTTTATCAGTTGGAAACAGGGCCTATCGAGTTTGAAAATTCCAAGAGGCAGGGCTCCACAAATTCGATTGAAGAAGATTTTGCTCGAAGTTCCTCGATGGGTTGCTCGTACTTCGGTTGCTTCTCCCGAGAGTTGTGGTTATAAGACGGAAACTCAGATTCAAGAAGCCGAAATAATCGAAACTAACCAATTATTGTCAGAGAAGAGGCAAAGAGATAAACTTCATGAAAAATTTTTCATTTTAAGATCTTTAATCCCTTCAACTAGTAAGGACGATGAAGTTACGCTACTCGATGAAGCAATTGATTATCTGAAACAACTTGAACGAAGAGTTAAAGAGTTAGAATCTGTTCGAGACCCAACGGAATCAGAGACAAGAACATCCGACAACTATGGAAACAACAAAAAAATTAGTAATTATACGAGGAAATCCCCACCGACAAAGAGGAAGGCTTGTGATGTGATAGAAATGGAAGAGACGGATGAAAGCTTGGACGAGTCGATTAACGTATATATAACCCACAAGGAAGTTATGATTAGGCTGAGATGTGCTTGGAGGGATGGTGTTTTGCTAGATATCATGGATGTTATTAGCAATTTTCATTTAGATTCTCATTCAGTTCAGTCATCCACCACAGAAGGAATTCTTTCTCTTACGATCAAGGCGAAGTTCAATGCATGGCCTGTTGCGTCGGCTAGGACGATCCAACAAGCTCTCCGGCGGATTGCCGGGAAATGTTGA 1131 41.29 MTAPSNGSNRMESNQLAEGSIIGEGRSRGASQAQSWQLIDDEISNCAHQSINSSDCISQTFVEPEKVNSDVNREKVKNHLPNQEDNRQKLNLWAPRKDDLHYRRILSNLFNSSNGSILGSLARICRRDSSFISWKQGLSSLKIPRGRAPQIRLKKILLEVPRWVARTSVASPESCGYKTETQIQEAEIIETNQLLSEKRQRDKLHEKFFILRSLIPSTSKDDEVTLLDEAIDYLKQLERRVKELESVRDPTESETRTSDNYGNNKKISNYTRKSPPTKRKACDVIEMEETDESLDESINVYITHKEVMIRLRCAWRDGVLLDIMDVISNFHLDSHSVQSSTTEGILSLTIKAKFNAWPVASARTIQQALRRIAGKC 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1833650 1834973 + Bda023308.1 Bda06g00113 7695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00113 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 252 IPR036638 GO:0046983
Bda06g00113 376 Gene3D - 191 260 IPR036638 GO:0046983
Bda06g00113 376 SMART finulus 194 243 IPR011598 GO:0046983
Bda06g00113 376 Coils Coil 227 254 - -
Bda06g00113 376 MobiDBLite consensus disorder prediction 256 275 - -
Bda06g00113 376 MobiDBLite consensus disorder prediction 1 16 - -
Bda06g00113 376 PANTHER TRANSCRIPTION FACTOR EGL1 18 372 - -
Bda06g00113 376 MobiDBLite consensus disorder prediction 1 27 - -
Bda06g00113 376 MobiDBLite consensus disorder prediction 244 276 - -
Bda06g00113 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Bda06g00113 376 Pfam Helix-loop-helix DNA-binding domain 196 238 IPR011598 GO:0046983
Bda06g00113 376 PANTHER TRANSCRIPTION FACTOR TT8 18 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00113 - - - qsu:112035245 348.591
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00113 Bda07g00480 CCT
Bda06g00113 Bda07g00480 ECH
Bda06g00113 Bda08g00368 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00113 Bda-Chr6:1833650 Bda08g00368 Bda-Chr8:3763014 2.27E-41 dispersed
Bda06g00113 Bda-Chr6:1833650 Bda08g00515 Bda-Chr8:5197591 2.46E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003574 4 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 3 2 2 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15973 PF00010 HLH 2.20E-07 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00113 Bda_Chr06 FPKM 0.675998 0.602508 0.997994 1.243736 3.427537 4.177933 3.582235 1.626746 1.08946