Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00114 ATGTCTTCCCCCAGCAAACGGCGAGAAATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTCGAGATGATGAACGATAGCATGCAAGAGTTCTATGTGGATTTCCATGGACCTAAAGAGAGCCCATATCAAGGAGGTGTGTGGAGGATAAGAGTTGAGTTGCCTGATGCTTATCCTTATAAATCACCATCTATTGGCTTTGTCAACAAAATTTATCATCCAAATGTTGATGAGATGTCTGGCTCTGTTTGTTTAGATGTTATCAACCAAACTTGGAGCCCCATGTTCGACCTTGTAAATGTTTTTGAAGTGTTTCTTCCTCAACTTCTATTGTATCCCAACCCGTCAGACCCGTTGAATGGAGAAGCTGCCGCTCTGATGATGCGCGATCGTACGACTTACGAACAACGAGTGAAAGAGTACTGTGAGAAATATGCGAAGCCGGAAGATATCGGAGCTCCGGCGGAGGAAAAATCAAGCGATGAGGAGCTGAGCGAAGATGATTACGGGTCCAGCGACGACTGCAGTTGCAGGTCTAGCTGA 546 45.05 MSSPSKRREMDLMKLMMSDYKVEMMNDSMQEFYVDFHGPKESPYQGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTTYEQRVKEYCEKYAKPEDIGAPAEEKSSDEELSEDDYGSSDDCSCRSS 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1838932 1840575 - Bda023309.1 Bda06g00114 7696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00114 181 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Bda06g00114 181 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 175 - -
Bda06g00114 181 SMART ubc_7 4 148 - -
Bda06g00114 181 Gene3D Ubiquitin Conjugating Enzyme 1 159 IPR016135 -
Bda06g00114 181 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Bda06g00114 181 SUPERFAMILY UBC-like 4 148 IPR016135 -
Bda06g00114 181 CDD UBCc 7 143 IPR000608 -
Bda06g00114 181 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Bda06g00114 181 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 175 - -
Bda06g00114 181 MobiDBLite consensus disorder prediction 149 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00114 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - jre:108997476 331.257
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00114 Bda08g00514 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00114 Bda-Chr6:1838932 Bda06g00584 Bda-Chr6:8075696 2.75E-98 dispersed
Bda06g00114 Bda-Chr6:1838932 Bda08g00514 Bda-Chr8:5194621 1.51E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00114 Bda_Chr06 FPKM 4.180809 4.118873 8.409715 6.643165 44.480469 36.350391 49.496807 14.16168 12.17877