Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00116 ATGTTAGAGCCCGAGCTCTGTTCCTCTAGAGTACTATCACCTTTTCGTGAAGAAAGTGGAGACGAAGAACTTTCAGTTCTTCCAAGACACACCAAAGTTATAGTCACTGGAAACAACAGAACAAAGTCTGTTTTGGTGGGTCTGCAAGGCGTGGTGAAAAAAGCTGTTGGCCTCGGGGGCTGGCATTGGCTGGTTTTGAAAAATGGGGTTGAAGTGAAGCTGCAAAGAAATGCGCTAAGTGTGCTGGAACATCCAACAGGGAATGAAGACGATGATCACGACTTTGACAATTCTAGCTGTAGCTCTGACATTGGCGAAAAGGACAATGATTTCTCCACCAATGCTGTGTTCTCCAAACTCAGTAAACCCAAAATTAGGCATTCAAGGCCTTGGGCGCCTTCTACATCCTCCAAGTTTACTGGTCGAGGGAGCTATCGAGAAGTTCATTCTATTCACATGCCTCAGCTGAGTCAGAGGGTGAACTTAGCAAAACTTGGAACTGACTCTCTGTGGAAATATTGCAGACGTTTCAACCTAGCAAATGGCCTGTCCAATACATCAAGGGAACATATACTTACTGCAGTACAGCGCCATTTTGAATTACAGACCCACTTGGATGAGGTTGCTGTATTGACAGAATTTATCAGGGTTGCAGCAGCCAAAAGACGAAGATCACAAGAAAGATGA 687 44.83 MLEPELCSSRVLSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNEDDDHDFDNSSCSSDIGEKDNDFSTNAVFSKLSKPKIRHSRPWAPSTSSKFTGRGSYREVHSIHMPQLSQRVNLAKLGTDSLWKYCRRFNLANGLSNTSREHILTAVQRHFELQTHLDEVAVLTEFIRVAAAKRRRSQER 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1847783 1849391 - Bda023311.1 Bda06g00116 7698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00116 228 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 165 217 IPR025718 GO:0005515
Bda06g00116 228 Gene3D - 144 228 IPR038291 -
Bda06g00116 228 PANTHER SAP30 1 225 IPR024145 -
Bda06g00116 228 PANTHER OS04G0166600 PROTEIN 1 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00116 - - - csv:101209634 354.369
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00116 Bda08g00513 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00545 Bda-Chr1:32374550 Bda06g00116 Bda-Chr6:1847783 2.35E-55 dispersed
Bda03g00252 Bda-Chr3:2269765 Bda06g00116 Bda-Chr6:1847783 7.67E-61 dispersed
Bda06g00116 Bda-Chr6:1847783 Bda08g01298 Bda-Chr8:52642416 1.20E-48 dispersed
Bda06g00116 Bda-Chr6:1847783 Bda08g00513 Bda-Chr8:5191602 3.29E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g15 Blo02g01113 Blo03g00218 Bda06g00116 Bda08g00513 Bpe05g00649 Bpe07g00102 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0791 Cone9ag0793 . . . . . . . . . . Bma05g00822 Bma12g00071 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00586 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005484 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00116 Bda_Chr06 FPKM 1.146006 0.0 0.0 0.0 0.0 0.0 0.0 0.880651 1.135968