Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00118 ATGCCGGCGACGGAGTATCAAGGCTCCTTTCTGGGCCGTTTAAGCATCCGCCGGAATCAAGTCATTTCGATGGACGGCAACCACGAGCAAGAACTCGAAGACCTTGAACTTTTTCAGAAACACGTAGCCGATCGATTTTCTGATCTGTTAACTCCTTCCGATGATGCATCGTCCTCCGATCCTTTTCTATCCGTCGCTTGGCTGCGGAAACTTCTCGATGCCTTCCTCTGCTGCGAGGCCCAGTTCAAAACTACCGTCATAATGGCACGCGATCCGTCTCAAATTTTGAAGCCGCCGCTCGATCGTCTTCTTCCCGAGCTTCTCGATCGCGTTGTGAAGTCTTTGGATATATGTAATGCAGTTATCCATGGGGTTGAGTCGGTTCGTCAGTTTCAGAAACTGGCTGAAATTGCCGTTTCGGCTCTGGAGAAACAGCCGATTGGCGACGGACAAGTGAAGCGAGCTCGGAAAGCTTTGAATTCTTTAATTACTTCAATGGCGGCCGAGGATAAAGACATCGGAAGCACGAAATCGACGGAGCGAACTTGGTCTTTCGGCCACAGGCAGAAAGACCGTACTTTCGCAGAATTCCGATCTCTTTCGCGGAGTATGGCCATGGGATGGTCTGCGGCAAAGCAGATTCAGGCGATTTCATCAAATCTAGTAGCTCCCAGAGGCAGCGAGTCTTCCGGATTGGCTTCGCCGGTCTACATAATGTCGACGGTACTGGCGTTTGTGATGTGGACTCTTGTAGCGGCGATTCCTTGCCAGGAACGAACCGGATTATCAACTCATTTTCCGGCAGCGAGGCAGCTGAGTTGGGTGCAACCGATGATCACGGTGCAGGAGAAAATCGCAGACGAGTGGAAGAAGAAGGAGAAGAAAGGAACGAGTGGATTAATGGAGGAGATGCAAAGAATGGAGAAACTAAGTCGTTCTTTAATGGAATCAACGGATTCCTTCACGTTTCCATTGGAGGGCGAAAGATTGCCGGAATTCACAGAGAAGGTGAGAGAATTGGGAGAGACTTGCCGAAAAATGGATGAAGGGCTGGTACCTCTGCAACAGCAAATCAGAGAGGTGTTTCATAGAGTTGTGAGAACCAGGACGGAGATGCTGGACATGATAGAGCAATCAGGGAGAGTAGTAGCTCCGATGGTATAA 1164 49.83 MPATEYQGSFLGRLSIRRNQVISMDGNHEQELEDLELFQKHVADRFSDLLTPSDDASSSDPFLSVAWLRKLLDAFLCCEAQFKTTVIMARDPSQILKPPLDRLLPELLDRVVKSLDICNAVIHGVESVRQFQKLAEIAVSALEKQPIGDGQVKRARKALNSLITSMAAEDKDIGSTKSTERTWSFGHRQKDRTFAEFRSLSRSMAMGWSAAKQIQAISSNLVAPRGSESSGLASPVYIMSTVLAFVMWTLVAAIPCQERTGLSTHFPAARQLSWVQPMITVQEKIADEWKKKEKKGTSGLMEEMQRMEKLSRSLMESTDSFTFPLEGERLPEFTEKVRELGETCRKMDEGLVPLQQQIREVFHRVVRTRTEMLDMIEQSGRVVAPMV 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1862145 1863308 + Bda023313.1 Bda06g00118 7700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00118 387 Pfam Protein ROH1-like 1 376 IPR008511 -
Bda06g00118 387 PANTHER OS02G0109200 PROTEIN 1 382 - -
Bda06g00118 387 PANTHER BPS1-LIKE PROTEIN 1 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00118 - - - csv:101212488 543.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00392 Bda-Chr3:3238759 Bda06g00118 Bda-Chr6:1862145 3.09E-105 dispersed
Bda06g00118 Bda-Chr6:1862145 Bda11g00873 Bda-Chr11:8590541 1.28E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g37 Blo02g01119 Blo03g00221 Bda06g00118 . Bpe05g00657 Bpe07g00100 . . . Cmo16g00633 . . . . . Cpe14g00494 . . . . . . . . Cla07g00758 Cam07g0813 Cec07g0871 Cco07g0848 Clacu07g0791 Cmu07g0798 Cre07g1154 Cone8ag0279 Cone12ag0285 . Cone9ag0804 . . . Cme07g01618 . . . . . . Bma05g00830 . . . . . Cma16g00583 . . . . . . . . . . . . . . . . . . . Csa04g00607 Chy07g01205 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005485 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00118 Bda_Chr06 FPKM 9.104608 11.427913 6.22276 5.555947 17.127428 15.16224 15.138517 5.798337 5.525377