Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00123 ATGGCTTCAGTCAAACAATCTGAGATTATATTGGATGAAATTCTGTATGGTAAACTGTGTAAGGATTCTAGTGAGCTTTCCATCTCTCACGGTGCAAATGCATATGAACTCCATGAAAAAAGGGGAAAAGATGTTCTCTTGAGTAGTTCCCATAATGAAGTACTGCTGCAACAGAAAGCAGGAAAAGTCTCAAGGAAGCAGCCTATGGTTCGATTAAAAGATCCGATGATTTTGGCGAGAATGGACAGTGTGAAGGACATTTCGGACAAGCTTGGATCACATCCAAAAGTTTCTATCATTTCAGAGAAAGCACAATTGGTGAAGCAAAAGAATAACTTCAATAGCAAGCGCGCTGATAGGAAAATTTTGAAAGTTTCTGCGAAGTCCAAACGTGATTCTTTTTCTATGAGAGTGAGTTCTGGAAGCTTCTGTTCAGCTACATCATCTGCCAGAGGATATGGTCTGAAGTCAGGTGTTCATGATATCACAAAGCTTGAAGAGGATTTACCTTTGAAGGATCTTCTTGGTCGCCCTTGTGAATTTCCTATTTTAAGCAAAGACATGGTAAAAAAAGAAGCTGATGCAAATGACAGTTTTCTGCAATCAGTCAGAAAAGCTTGCTCTATAATTCAGCTCCCAAGGCTTGTCCAGTCCATAAGCATCGAGACAGATAGTGTTTCTACCAATAACATGTCCTCTAGTCTTTTATGTTCTGTGGCTGGTGGTGTGAATGGTGACAAAGGAGACGACTGCATAACTGACTTATCTTCATGTAACAAGGATTCTTATAGCAAGTTTGATACTCCTGCTAACCCGCTCAACTATTTACTGTACAAACCCAATGATATTTATGAACTACTGGCTCTTCCTCCTCCCAAAGATTTGGATTCTTTACTCCAGGATGCAATCAAGCCTTCCTTATCTTTAAAGAATGCTCCTGATATGCGTTCAAGTAAGCAGCTACCTCGCCGTGCTTGCTTACAACCTTTTCAGTGGTCACATGCTTTTAGTGGGCATTGTAAACCCATTTCAGATTCACCTAAGTTATCCACAAGTAAGAGCTCGTGCCCTGGTAGATGGTCACGAATCCGAAATCTTGCAATCTCTCATGGAAAGACCAATGGTAGTTTTATTAACTTGGAATCGCTAACATATGATCAGAGTTTGGTTCCTCTTATAAAGGCTCCTAGTTCAGTGGACAGAACTTTAATTGATGTTTCTGGTAATAATTCTCAATGCAGCAGGAAAGTATTGTCTTCTACAACAAGTTTGAAAGCTTCCCTTCTTTCAATTTTGTTTTTGTGTATTTCAGGTGGACATTGCCCCATGTTAGAAGGTGCCGCTCAAACTCTATTTGACATGGCAACTCATAGCTCGAGGCAGAACACAGAAGAGGTGGTGAGGTGGCCCAAAAAAACCTCACAGAAGGCCATGAAAGCCAGGAAGTGGAAATCAAATGATAAACCGGAAGAAATATTGACGACGTCCAATTCAGGATCAGGCTCAGACTATCCAATGAGAAATACGGGTTCGCTCATGTCCTCCAAAAAGCCGAGGCTCTATACAAAAGAGAGCAAGAAAGATCTTGGTCATTTCAATTACAGAAAAGGCCCATTAAATTGGTCAAATCCGCGATCAAGCCGATCATCACCAAGCAAATTAAGTAACGACTCGATGTTCGAAACAAGATATTCGACTGTTGGTATTATAAAACAATCGTGTATGATGCCTCCTCCAGATAAGACTCGTGAGAGTCAGCCGAAGGTAAGAAAACTGATGCCAATGGGATGGAGGAGGGGAAAAGACAGGATAGAGTGA 1818 41.03 MASVKQSEIILDEILYGKLCKDSSELSISHGANAYELHEKRGKDVLLSSSHNEVLLQQKAGKVSRKQPMVRLKDPMILARMDSVKDISDKLGSHPKVSIISEKAQLVKQKNNFNSKRADRKILKVSAKSKRDSFSMRVSSGSFCSATSSARGYGLKSGVHDITKLEEDLPLKDLLGRPCEFPILSKDMVKKEADANDSFLQSVRKACSIIQLPRLVQSISIETDSVSTNNMSSSLLCSVAGGVNGDKGDDCITDLSSCNKDSYSKFDTPANPLNYLLYKPNDIYELLALPPPKDLDSLLQDAIKPSLSLKNAPDMRSSKQLPRRACLQPFQWSHAFSGHCKPISDSPKLSTSKSSCPGRWSRIRNLAISHGKTNGSFINLESLTYDQSLVPLIKAPSSVDRTLIDVSGNNSQCSRKVLSSTTSLKASLLSILFLCISGGHCPMLEGAAQTLFDMATHSSRQNTEEVVRWPKKTSQKAMKARKWKSNDKPEEILTTSNSGSGSDYPMRNTGSLMSSKKPRLYTKESKKDLGHFNYRKGPLNWSNPRSSRSSPSKLSNDSMFETRYSTVGIIKQSCMMPPPDKTRESQPKVRKLMPMGWRRGKDRIE 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1924543 1927523 + Bda023318.1 Bda06g00123 7705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00123 605 MobiDBLite consensus disorder prediction 539 559 - -
Bda06g00123 605 MobiDBLite consensus disorder prediction 573 605 - -
Bda06g00123 605 MobiDBLite consensus disorder prediction 490 518 - -
Bda06g00123 605 MobiDBLite consensus disorder prediction 519 533 - -
Bda06g00123 605 PANTHER F22C12.19 9 603 - -
Bda06g00123 605 MobiDBLite consensus disorder prediction 463 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00123 - - - pmum:103337593 439.113
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00123 Bda07g00158 CCT
Bda06g00123 Bda09g00630 CCT
Bda06g00123 Bda08g00501 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00123 Bda-Chr6:1924543 Bda08g00501 Bda-Chr8:5092682 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g51 Blo02g01124 Blo03g00229 Bda06g00123 Bda08g00501 Bpe05g00663 Bpe07g00092 . . . Cmo16g00629 . . . . . Cpe14g00490 . . . . . . . . Cla07g00744 Cam07g0796 Cec07g0862 Cco07g0831 Clacu07g0777 Cmu07g0784 Cre07g1136 Cone8ag0273 Cone12ag0280 . . . . . Cme07g01611 . . . . . . Bma05g00837 Bma12g00062 . . . . Cma16g00579 . . . . . . . . . . . . . . . . . . . Csa04g00614 Chy07g01197 .
Vvi2g265 . . Bda06g00123 . . . Bma07g01037 Bma14g00094 . . Cma02g00951 . Car02g00700 Car15g01195 . . Cpe05g00763 . . . . . . . . . . . . . . Cone8ag0584 Cone12ag0568 . . . Csa05g00079 Chy09g01345 . . Blo19g00132 Bda07g00158 Bda09g00630 Bpe08g00910 Bpe11g00377 . . . Cmo02g00959 Cmo15g01392 . . . . . . Bhi12g00072 . . Lac11g1891 Hepe06g1424 . Lcy12g1502 Cla01g00134 Cam01g0136 Cec01g0136 Cco01g0138 Clacu01g0132 Cmu01g0134 Cre09g2371 Lsi09g00124 . . Cme09g01893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003101 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 11 3 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00123 Bda_Chr06 FPKM 2.537549 2.962392 3.114485 3.12145 3.223707 3.369161 3.364708 2.287505 1.558943