Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00152 ATTTTGGAAATGGAGAACTTGATCTCTTTGGTGAATAAAATTCAGAGAGCTTGCACGGCTCTAGGTGATCATGGAGAAGCTAGTGCATTGCCCACACTTTGGGATTCTTTGCCTGCGATTGCCGTTGTCGGTGGTCAGAGCTCAGGCAAGTCTTCAGTATTAGAAAGCATTGTTGGGAAGGACTTCTTACCTCGAGGATCTGGGATTGTTACTCGGCGGCCGCTTGTTTTGCAGCTTCATAAGATTGATGAAGGAAGTAGAGAATATGCTGAGTTCCTTCATCTTCAAAGGAAAAAATTCACTGATTTTGCGGCTGTCAGGAAGGAAATTCAGGATGAAACTGATCGAGAGACTGGCCGGTCTAAACAAATCTCCAGTGTTCCAATTCATCTCAGTATATATTCTCCAAATGGTAGGGTTAATTTTTCTTGTACATTCTCTAATTTTTATATTGTTCTTCAAATTTTGGCAGTTGTCAACTTAACGCTCATTGATCTTCCTGGTCTCACAAAAGTTGCTGTTGATGGACAATCGGATAGCATTGTGATGGACATTGAGAATATGGTTCGCTCCTTTATTGAGAAGCCCAATTGTATTATTCTTGCTATATCACCAGCCAATCAAGATCTTGCTACATCAGATGCTATTAAAATCTCCCGTGAAGTTGATCCTACAGGGGAAAGGACATTTGGTGTCTTGACTAAGATTGATCTCATGGATAAGGGTACTGATGCAGTTGATATATTAGAAGGAAAATCTTATCGGCTAAAATTTCCATGGGTTGGTGTTGTTAACCGCTCACAAGCGGATATTAACAAGAATGTCGATATGATTGCTGCTCGACGTAGAGAGCGTGAATATTTTGCAACTACCCCAGAATACAAGCACCTTTCTAATAGAATGGGTTCTGAGCATCTAGCAAAGATGCTTTCAAAGCATCTAGAAACGGTGATCAAGTCCCGTATCCCTGGCATCCAGAGCCTTATCAACAAAACCATTGCTGAACTTGAAGCTGAACTGAGCCGTCTTGGAAAGCCTGTGGCTACCGATGCTGGAGGGAAACTATATATGATTATGGAGATTTGTCGAATTTTTGATCAAAACTACAAAGAGCATCTTGATGGAGTCCGACCTGGAGGTGATAAAATTTACCACGTCTTTGACAATCAACTTCCTGCTGCTCTAAAAAGATTGCAGTTTGACAAGCAACTTTCGATGGAAAATATAAAGAAGCTTATCACCGAAGCTGATGGATATCAGCCGCATCTAATAGCTCCTGAGCAAGGATACCGTCGCCTTATCGAATCTACTTTAATCACCATAAGAGGCCCTGCTGAGGCAGCTGTTGATGCGGTTCATGGATTGTTGAAGGATTTGGTTCACAAGGCTATCAAGGAGACTATAGAATTGAAGCAATATCCTGGTCTTAGAACGGAGGTAGGAAATGCAGCCATTGAATCTCTCGACAGAATGAGGGATCAAAGCAAAAAGGCAACCCTCCAACTAGTTGACATGGAATGCAGTTACTTGACTGTGGATTTCTTCCGAAAGCTTCCTCAGGATGTTGAGAAGGGTGGCAACCCCACCCACTCAATTTTTGACAGATACAATGATTCCTATCTGAGACGCATTGGAACAACGGTTTTGTCGTATGTAAATATGGTCTGTGCAAGTTTACGCAACTCCATTCCGAAGTCCATCGTTTATTGTCAAGTGCGAGAAGCTAAACGAAGCCTGCTCGATCATTTCTTCACTGAATTGGGTAAATTAGAGCAAAAGCGACTGTCGTCTCTGTTGAACGAGGACCCAGCAGTGATGGAGCGGCGAACAGCCCTCGCAAAGAGGCTGGAGCTGTACAGGAGTGCGCAATCAGAAATCGATACGGTTGCTTGGTCTAAGTAG 1902 42.8 ILEMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLQRKKFTDFAAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNGRVNFSCTFSNFYIVLQILAVVNLTLIDLPGLTKVAVDGQSDSIVMDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAVDILEGKSYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFATTPEYKHLSNRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIAELEAELSRLGKPVATDAGGKLYMIMEICRIFDQNYKEHLDGVRPGGDKIYHVFDNQLPAALKRLQFDKQLSMENIKKLITEADGYQPHLIAPEQGYRRLIESTLITIRGPAEAAVDAVHGLLKDLVHKAIKETIELKQYPGLRTEVGNAAIESLDRMRDQSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSSLLNEDPAVMERRTALAKRLELYRSAQSEIDTVAWSK 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2223738 2228350 + Bda023354.1 Bda06g00152 7734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00152 633 SMART GED_2 536 629 IPR003130 GO:0003924|GO:0005525
Bda06g00152 633 SMART dynamin_3 4 274 IPR001401 GO:0003924|GO:0005525
Bda06g00152 633 Pfam Dynamin GTPase effector domain 537 629 IPR003130 GO:0003924|GO:0005525
Bda06g00152 633 PRINTS Dynamin signature 37 55 IPR022812 -
Bda06g00152 633 PRINTS Dynamin signature 224 240 IPR022812 -
Bda06g00152 633 PRINTS Dynamin signature 205 223 IPR022812 -
Bda06g00152 633 PRINTS Dynamin signature 62 79 IPR022812 -
Bda06g00152 633 PRINTS Dynamin signature 155 172 IPR022812 -
Bda06g00152 633 PRINTS Dynamin signature 247 266 IPR022812 -
Bda06g00152 633 PANTHER DYNAMIN 5 632 IPR022812 -
Bda06g00152 633 ProSiteProfiles GED domain profile. 541 633 IPR020850 -
Bda06g00152 633 Pfam Dynamin central region 244 511 IPR000375 -
Bda06g00152 633 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 323 IPR030381 GO:0005525
Bda06g00152 633 Gene3D - 4 332 IPR027417 -
Bda06g00152 633 Pfam Dynamin family 40 236 IPR045063 -
Bda06g00152 633 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Bda06g00152 633 CDD DLP_1 36 323 IPR001401 GO:0003924|GO:0005525
Bda06g00152 633 Gene3D Dynamin, middle domain 354 609 - -
Bda06g00152 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 331 IPR027417 -
Bda06g00152 633 PANTHER DYNAMIN-LIKE PROTEIN 1E 5 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00152 - - - jre:108993767 1113.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00152 Bda08g00462 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00152 Bda-Chr6:2223738 Bda11g00309 Bda-Chr11:3426578 0 dispersed
Bda06g00152 Bda-Chr6:2223738 Bda08g00462 Bda-Chr8:4819488 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g146 . . Bda06g00152 Bda08g00462 Bpe05g00697 Bpe07g00066 . . . . . . . . . Cpe14g00456 . . . . . . . . Cla07g01094 . Cec07g1258 Cco07g1235 . . Cre07g1519 . . Cone6ag0857 Cone9ag0859 . . . Cme07g01570 . . . . . . Bma05g00879 Bma12g00613 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00667 Chy07g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00152 Bda_Chr06 FPKM 7.836895 8.80426 9.433092 9.620077 9.203212 9.388027 9.684404 9.528069 8.465531