Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00159 ATGATGGCTATTCCGGGAGGTGGTTCAAGTGTTTGGGATGAAGGAAATGATTTGTATACGGAGCTGTGGAAGGCTTGTGCTGGTCCTCTAGTAGAGATTCCTAGCCTCCACCAAAGGGTATACTACTTTCCGCAAGGTCATATGGAACAATTAGAAGCTGGCACGGATCAGCATCTGAATCAGACGCCTCCTCTATTTAGTCCTCCCTCAAAGATTCTCTGTCGCGTGATGAACATTCAGCTGCTGGCAGAACAAGAAACAGAGGAGGTTTACGCACAAGTAACTTTGATTCCAGATCATAACCAAAACGATCCAGAAAGTCCGGATCCATGTGATGGCGAACCTTCAAGACCAAGTGTTCATGCATTTTGCAAGGTTTTAACCGCATCAGATACTAGCACGCATGGTGGGTTCTCTGTACTCCGTAAACATGCGAATGAATGCCTTCCTCAATTGGACATGACCCAGGCAACCCCAACACAAGAACTTGTTGCCAAGGACCTCCATGGTTTTGAGTGGCGATTCAAGCATATTTTTAGAGGTCAACCACGGAGGCACTTGCTGACAACTGGGTGGAGTACATTTGTTACTTGTAAAAGATTAACTGCAGGGGATTCTTTTGTATTTTTGAGAGGGGATAATGGGGAATTACGAGTTGGAGTAAGGCGCCTTGCTCATCAGCAAAGCAACATACCTACATCTGTTATCTCAAGTCAGAGCATGCACCTTGGCGTGCTTGCCACAGCATCGCATGCTTTAGCGACCAAAAGCCCTTTTGTCGTGTATTATAAGCCAAGGTCAAGTCAATTCATCGTGAGCTTGAATAAGTACTTGGAAGCTGTTAGCAACAAGTTTGAACTTGGTGTGAGATTTAAGATGAGGTTCGAGGGTGAGGATTCTCCCGACAGAAGCTTTTCAGGTACTGTAGTTAGAGTTGAAGATCTATCTCCTCACTGGGGAGATTCGAAATGGCGATCACTGAAAGTTCAATGGGATGAACCTGCATCTATTCCGAGACCTGAGAGGGTATCTGCTTGGGAGATAGAACCCATCGGAACTTCGACAGCCACTGGTGTGCCTCAACCAGTTTTGGTAAAAAACAAAAGACCTCGCCCACCTGTTGAAATCCCAGCTCTAGATTCTACGAATTCAACTGTGTCCACTCTTTGGCATCCTGGGTTGAGTCAATCTCATGATAGAGCACAATTGAGCGTTACTGCAGATAGCAAAAGAAGCGACAATCAGCTTGTGTGGCAGCGTAAACATTCAGATATTAGCAGTAATAGTTGCAACTCTGGGTCAATGACACACAATGATGGGCCTTGGTTACCTTCCTCCCACGCAAATGGTGGTTTGCAGAATCTCTGTCAGGATGTCTCAGAGGATTGCAGAAGTGTCTCCCGGTGGCCTGATTATGCAGGCTATTCTAGTTTGAATTTGTCAAAGCCAGACAATGACTTTGGGGTTGAGAAAAATATGGGTAAAGGGAAGAAAGGTGAGGTCGGTTCTAGCTGTCGGTTGTTTGGTATCGAGCTGATCAATAATTGTGCTGGTGAGAAGCCATCGAAGGAAACTGCTGAAGGAAATGGCAATAGAATTTCTTTGGCTGATTCTGACCAAAAATCCAATTTTTCCCAGGCTTCTAAACAAAGAATTCAAGATTTGTTGCAACTTTCCACGAAAGAAATGACAAGCAAGCAGAACTGCTCGACTAACACGAGAAGCCGAACAAAAGTTCAAATGCATGGAATTGCTGTTGGTCGTGCAGTGGACTTAACAGCGTTGGAAGGGTACGATCAGCTCATAAATGAACTCGAGAAAATGTTTGAAATCAAGGGACAGCTTTGCCCAAGAGACAAGTGGGAGATTGTTTTTACCGACGATGAAGGGCATATGATGCTCTTGGGGGATGACCCTTGGCAGGAATTCTGTGACATGGTGAGAAGAATATTGATATGTTCAAGCGAGGACGTGAAGAAGATGAGACGCGGAAGGAAATTTCCGATTTCCGATGGCGGAGGGACTGAAACGAGCTTTGAACTGGGTGAAACTTGA 2055 45.21 MMAIPGGGSSVWDEGNDLYTELWKACAGPLVEIPSLHQRVYYFPQGHMEQLEAGTDQHLNQTPPLFSPPSKILCRVMNIQLLAEQETEEVYAQVTLIPDHNQNDPESPDPCDGEPSRPSVHAFCKVLTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTCKRLTAGDSFVFLRGDNGELRVGVRRLAHQQSNIPTSVISSQSMHLGVLATASHALATKSPFVVYYKPRSSQFIVSLNKYLEAVSNKFELGVRFKMRFEGEDSPDRSFSGTVVRVEDLSPHWGDSKWRSLKVQWDEPASIPRPERVSAWEIEPIGTSTATGVPQPVLVKNKRPRPPVEIPALDSTNSTVSTLWHPGLSQSHDRAQLSVTADSKRSDNQLVWQRKHSDISSNSCNSGSMTHNDGPWLPSSHANGGLQNLCQDVSEDCRSVSRWPDYAGYSSLNLSKPDNDFGVEKNMGKGKKGEVGSSCRLFGIELINNCAGEKPSKETAEGNGNRISLADSDQKSNFSQASKQRIQDLLQLSTKEMTSKQNCSTNTRSRTKVQMHGIAVGRAVDLTALEGYDQLINELEKMFEIKGQLCPRDKWEIVFTDDEGHMMLLGDDPWQEFCDMVRRILICSSEDVKKMRRGRKFPISDGGGTETSFELGET 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2298415 2302031 + Bda023361.1 Bda06g00159 7741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00159 684 CDD B3_DNA 123 223 IPR003340 GO:0003677
Bda06g00159 684 MobiDBLite consensus disorder prediction 527 546 - -
Bda06g00159 684 Pfam Auxin response factor 249 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda06g00159 684 MobiDBLite consensus disorder prediction 424 446 - -
Bda06g00159 684 Gene3D - 284 357 - -
Bda06g00159 684 Pfam B3 DNA binding domain 123 223 IPR003340 GO:0003677
Bda06g00159 684 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Bda06g00159 684 Gene3D - 120 224 IPR015300 -
Bda06g00159 684 Pfam AUX/IAA family 562 610 IPR033389 -
Bda06g00159 684 SMART B3_2 123 225 IPR003340 GO:0003677
Bda06g00159 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 672 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda06g00159 684 SUPERFAMILY DNA-binding pseudobarrel domain 113 252 IPR015300 -
Bda06g00159 684 Gene3D - 569 662 - -
Bda06g00159 684 ProSiteProfiles PB1 domain profile. 574 655 IPR000270 GO:0005515
Bda06g00159 684 MobiDBLite consensus disorder prediction 520 546 - -
Bda06g00159 684 PANTHER AUXIN RESPONSE FACTOR 9 13 672 - -
Bda06g00159 684 SUPERFAMILY CAD & PB1 domains 569 650 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00159 Bda-Chr6:2298415 Bda12g00280 Bda-Chr12:3024876 1.60E-15 dispersed
Bda08g00098 Bda-Chr8:866056 Bda06g00159 Bda-Chr6:2298415 9.65E-39 transposed
Bda10g01146 Bda-Chr10:45519615 Bda06g00159 Bda-Chr6:2298415 0 transposed
Bda11g01574 Bda-Chr11:48941667 Bda06g00159 Bda-Chr6:2298415 3.26E-27 transposed
Bda06g00159 Bda-Chr6:2298415 Bda08g00454 Bda-Chr8:4700324 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15978 PF02362 B3 8.10E-21 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00159 K14486 - vvi:100247833 893.264