Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00162 TCCTTGAAAATGCCCGAACCGGAGCTCGACGGCGCGGCACACTTTCCTCTCAAAACGACGGTCGATGATAGGGACCCGCTCTTGGACTTTGATGTCGATATGGGGAGCCCGTGGCCGTTGGATCAGATCTCTCCGATCCTTATCACTTCCTGCGATCAGCCTTGCTCTCCGCTCTGGGCTTTCTCCGACGGGGAAGAAGTTGGGGATGGAAAACTCCATGCCAATGCTCGCTCAGTGCACGGTAAGTTTCGTTTCTTCCTGCCGATGCGACGTTTTCTTATATCGATTTTCTTTTCGTTTTCGATTCACTCATTTGGATTATATTTTCTAAATTCAGGCATAAATAGTTTGAATTTGGCGACGGAAAAACCAACCCAGAACATTGAAACAAGACTGCTCCAATTACCCCCTCTGTGGGGACTTAAATCAGCGGACAATCCAGATGGGTACTGCTTGATCAAAGAGAAAATGACTCAAGCCCTTAGATACTTGAAAGAATTGACCGACCAACACGTTCTAGCTCAGGTCTGGGCGCCAGTCAAGAGCGGGGGACGATATGTGCTGACAACTCTCGAGCAACCCTTCGTTCTGGATGCCCAAAGCAATGGACTTCATCAGTATCGAATGGTCTCTCTGATGTACATGTTCTCGGTCGATGGCGAAACTGACGGAGTTCTTGGACTTCCCGGCCGGGTATTCCAGCAGAAATTGCCGGAATGGACTCCAAATGTGCAGTTTTACTCGAGCAAAGAGTATCCAAGGAGAAATCACGCTCTACACTACAACGTCCAGGGAACTTTGGCTTTGCCGGTCTTCGAATCGTCCGGCCAATCCTGTATTGGTGTACTCGAGCTCATTATGAACTCTCCCAAAATCAATTATGCTCCTGAGGTTGATAAAGTCTGTAAAGCTCTTGAGGCTGTCAACTTGAAAAGCTCAGAAATTTTGGATCATCCAAACACACAGATATGCAATGAAGGTCGCCAAAACGCGTTGGCTGAAATTTTGGAGGTTCTTACAGTTGTATGTGAAATTCACAAATTACCACTGGCTCAAACCTGGGTTCCTTGCAAGCACGGGAGCGTTCTTGCCAATGGCGGTGGTTTAAAGAAGAGCTGCTCTAGCTTTGATGGCAGTTGTAGGGGACAAGTCTGCATGTCTGCAACTGATATAGCGTCTTATATTGTCGATGCTCATGCTTGGGGTTTTCGAGAGGCTTGTCTTGAACATCATTTGCAGAAAGGCCAAGGAGTGGCTGGCCGGGCGTTTTTGTCCCAAACCTCATGTTTCTCCATGGATATAACCCTGTTCTGCAAGACGGAATACCCTTTAGTGCACTATGCTCGAATGTTTGAGTTAAAGAGCTGTTTTGCAGTCTGCCTCCGGAGCAGTTTTACCGGCGATGATGATTATATTCTTGAGTTTTTCCTCCCGTCCGTCGTAAAAGAATATTACGAACAACTGACTTTGTTGGGCGCGTTATTGGCTACGATGAAACACCATTTTCACACGCTCAAGGTTGCATCGGGAATCAAGTTCGAAGAGGGGGAAATTTTCGTAGAAATCATAGAAGCTTCGACTGATGGCGGACTAAACTCTAGATTTGAATATATTCGAATACCTCAATCTGTCGAATTGCCACCTGAATTTGATCTTGCTCCTAATGGTGGAGAGATGTTTGAATTTAATCCGACAAAACAGAAGTTACTGGCCGGTTGTGATGATGACGAAAACAATACTGGTCCGGAGAGTAAAACACGTGTTCCTTCTCCTCCGAAAGACGCGAGAAAGAGATTGGAGAGAAAACGAGGAAAAACGGAGAAATCGATAAGTTTAGATGTTCTTCAACAATATTTCACCGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGGGTTTGCCCGACAACGATGAAGCGCATCTGTCGGCAGCACGGAATTTCCCGCTGGCCATCTCGGAAGATCAACAAGGTTAATCGATCACTCTCTAAGCTAAAACGAGTAATTGAATCCGTCCAAGTTGCCGAAGGAGCATTTGGTTTGACTCCTCTCACCACAACCACTAATTCTCCCCCATTTTCCCCCAATGGACCAAATCAGCATAGCTCACCCATCCGTAAGCCGAGTGATCATCATGGTGAAAATAAAGAATTATCACCAGGAAAAGACCTACCATCTTGGATGGACGACGGATCCGTTGGAGGGACATTGCGTTTTGACGAATATATGCACGACAAAAGTGGCCTCGGGCCGAAGATTTGTAAACCAACGAAGAGTGGGTCGAGGGAAGGGAGTGGAGGGACTCCTACTTCTCATGGCTCTTGCCAAGGTAGTCCTGCTAATGAAAGCATTCCAGCCAGGGATCCAGCTGATTTCCCCTATCATGAGCAACCCATCACAGGAATGGATTCCCCCAGAAACCTCAATCCCCCAGAGTCATATCCGGTTGATGATCTACTTCGGGCAACAGAAGTCGAAGAACCGTTTGGAGCAATGCTTATAGAAGATGCCGGAAGTTCAAAAGATTTAAGAAATCTTTGTCCATCTGCAGCAGATGCCGTTTTGGACGAGCACATTCCCGAATCTTATTGGCCACATTTTCCCGGTTCAGCATCTGCAGTCAAGCAGCAGGCAAATGATGGAACGAGGCAAGAAACAAAGAGGATGACGATCAAGGCGACGTATAAAGAAGATATCATAAGATTTCGCATACCCTTGAGCTCCGGTGTAGTGGAGTTAAAAGAAGAAGTGGCTAAGAGGCTGAAACTGGAGGTGGGTACTTTTGATATAAAATATATAGACGATGATCAAGAATGGGTTCTTATAGCCTGTGATGCAGACCTTCAAGAATGCGTCGAGATTTCGAAGTCATCAGGCAGTAACATAATCAGACTCTTGATTCATGACTTAAACAGCAATCTTGGAAGCTCCTGTGAGAGCACAGGGGAATGA 2949 46.32 SLKMPEPELDGAAHFPLKTTVDDRDPLLDFDVDMGSPWPLDQISPILITSCDQPCSPLWAFSDGEEVGDGKLHANARSVHGKFRFFLPMRRFLISIFFSFSIHSFGLYFLNSGINSLNLATEKPTQNIETRLLQLPPLWGLKSADNPDGYCLIKEKMTQALRYLKELTDQHVLAQVWAPVKSGGRYVLTTLEQPFVLDAQSNGLHQYRMVSLMYMFSVDGETDGVLGLPGRVFQQKLPEWTPNVQFYSSKEYPRRNHALHYNVQGTLALPVFESSGQSCIGVLELIMNSPKINYAPEVDKVCKALEAVNLKSSEILDHPNTQICNEGRQNALAEILEVLTVVCEIHKLPLAQTWVPCKHGSVLANGGGLKKSCSSFDGSCRGQVCMSATDIASYIVDAHAWGFREACLEHHLQKGQGVAGRAFLSQTSCFSMDITLFCKTEYPLVHYARMFELKSCFAVCLRSSFTGDDDYILEFFLPSVVKEYYEQLTLLGALLATMKHHFHTLKVASGIKFEEGEIFVEIIEASTDGGLNSRFEYIRIPQSVELPPEFDLAPNGGEMFEFNPTKQKLLAGCDDDENNTGPESKTRVPSPPKDARKRLERKRGKTEKSISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQVAEGAFGLTPLTTTTNSPPFSPNGPNQHSSPIRKPSDHHGENKELSPGKDLPSWMDDGSVGGTLRFDEYMHDKSGLGPKICKPTKSGSREGSGGTPTSHGSCQGSPANESIPARDPADFPYHEQPITGMDSPRNLNPPESYPVDDLLRATEVEEPFGAMLIEDAGSSKDLRNLCPSAADAVLDEHIPESYWPHFPGSASAVKQQANDGTRQETKRMTIKATYKEDIIRFRIPLSSGVVELKEEVAKRLKLEVGTFDIKYIDDDQEWVLIACDADLQECVEISKSSGSNIIRLLIHDLNSNLGSSCESTGE 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2337739 2341628 + Bda023364.2 Bda06g00162 7744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00162 982 MobiDBLite consensus disorder prediction 681 703 - -
Bda06g00162 982 Gene3D - 884 968 - -
Bda06g00162 982 SUPERFAMILY CAD & PB1 domains 883 972 - -
Bda06g00162 982 MobiDBLite consensus disorder prediction 704 718 - -
Bda06g00162 982 MobiDBLite consensus disorder prediction 589 606 - -
Bda06g00162 982 MobiDBLite consensus disorder prediction 741 810 - -
Bda06g00162 982 MobiDBLite consensus disorder prediction 571 606 - -
Bda06g00162 982 Pfam RWP-RK domain 610 657 IPR003035 -
Bda06g00162 982 PANTHER PROTEIN NLP8 114 980 IPR045012 GO:0003700
Bda06g00162 982 CDD PB1_NLP 888 968 IPR034891 -
Bda06g00162 982 SMART PB1_new 887 969 IPR000270 GO:0005515
Bda06g00162 982 MobiDBLite consensus disorder prediction 681 729 - -
Bda06g00162 982 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 114 980 - -
Bda06g00162 982 Pfam PB1 domain 888 968 IPR000270 GO:0005515
Bda06g00162 982 ProSiteProfiles PB1 domain profile. 887 969 IPR000270 GO:0005515
Bda06g00162 982 ProSiteProfiles RWP-RK domain profile. 589 677 IPR003035 -
Bda06g00162 982 MobiDBLite consensus disorder prediction 760 780 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00162 - - - csv:101212500 1173.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00320 Bda-Chr3:2741407 Bda06g00162 Bda-Chr6:2337739 4.83E-146 dispersed
Bda06g00162 Bda-Chr6:2337739 Bda08g00458 Bda-Chr8:4769342 0 dispersed
Bda14g00798 Bda-Chr14:6156420 Bda06g00162 Bda-Chr6:2337739 4.50E-10 transposed
Bda06g00162 Bda-Chr6:2337739 Bda08g00451 Bda-Chr8:4639458 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00162 . 208 982 NLP Transcription Factor Family AT1G64530 52.8 3.9e-216 748.0
Bda08g00451 . 173 966 NLP Transcription Factor Family AT1G64530 51.9 7.0e-213 737.3
Bda06g00162 . 287 982 NLP Transcription Factor Family AT4G24020 54.4 6.7e-200 694.1
Bda08g00451 . 252 966 NLP Transcription Factor Family AT4G24020 55.2 7.4e-199 690.6
Bda08g00458 . 233 927 NLP Transcription Factor Family AT4G24020 54.2 4.1e-189 658.3
Bda11g00482 BCT 27 710 NLP Transcription Factor Family AT2G43500 51.0 1.4e-168 590.5
Bda13g00247 BCT 152 918 NLP Transcription Factor Family AT3G59580 53.3 4.7e-209 724.9
Bda11g00482 BCT 142 679 NLP Transcription Factor Family AT3G59580 58.3 2.0e-167 586.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15979 PF00564 PB1 5.80E-19 CL0072 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00162 Bda_Chr06 FPKM 3.451174 3.270021 5.488846 4.534175 5.535076 5.409679 6.496614 4.364098 3.266154