Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00180 ATGGAAGGAATTCCCCACCCTATACCTCGGACTGTGGAGGAGGTCTTCTGTGACTTCAAAGGCAGACGTTCTGGCTTGATCAAAGCTCTCACCACTGATGTTGAGAAATTCTTTCAGCAATGCGATCCTGAGAAGGAAAACTTATGTCTATATGGACTTCCAAATGAGACGTGGGAAGTTAATCTACCAGTGGAGGAGGTTCCCCCTGAGCTTCCTGAGCCAGCTTTAGGCATAAACTTTGCTAGGGATGGTATGCAGGAGAAGGATTGGCTATCATTGGTGGCTGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTTTATTTTGGTGCACGCTTTGGTTTTGGTAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGATCTACCAACCATATTTGAAGTTGTCACAGGAAATGCTAAGCATCCAAAGGAGCAGTCGGCAACTCATAATAACAGCAGCAAAAGCAAATTGAGCGGGAAGATCCAATCTCGGCCATCTGAGTCACAGAGCAAGGGAGTGAAGATGTCTCCACCTCCCAAAGAAGATGAAGACAGTGGGGAGGAAGAAGAAGATGACGAGCAGGGTGCAACATGTGGGGCGTGTGGGGATAACTACGGAAATGATGAGTTTTGGATTTGTTGTGATGTGTGCGAAAGATGGTTCCATGGGAAATGTGTTAAGATTACACCTGCAAAGGCAGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTT 759 45.59 MEGIPHPIPRTVEEVFCDFKGRRSGLIKALTTDVEKFFQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKHPKEQSATHNNSSKSKLSGKIQSRPSESQSKGVKMSPPPKEDEDSGEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2481505 2484349 + Bda033738 Bda06g00180 7762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00180 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 250 - -
Bda06g00180 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Bda06g00180 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Bda06g00180 253 MobiDBLite consensus disorder prediction 184 198 - -
Bda06g00180 253 CDD PHD_AL_plant 200 249 IPR044104 -
Bda06g00180 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bda06g00180 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Bda06g00180 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Bda06g00180 253 Pfam PHD-finger 200 249 IPR019787 -
Bda06g00180 253 MobiDBLite consensus disorder prediction 142 198 - -
Bda06g00180 253 MobiDBLite consensus disorder prediction 143 175 - -
Bda06g00180 253 SMART PHD_3 199 247 IPR001965 -
Bda06g00180 253 PANTHER CPG BINDING PROTEIN 1 250 IPR045104 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00180 Bda08g00428 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01999 Bda-Chr1:56332600 Bda06g00180 Bda-Chr6:2481505 1.69E-115 dispersed
Bda03g00819 Bda-Chr3:6954682 Bda06g00180 Bda-Chr6:2481505 3.22E-93 dispersed
Bda06g00180 Bda-Chr6:2481505 Bda13g01589 Bda-Chr13:39420346 1.79E-114 dispersed
Bda06g00180 Bda-Chr6:2481505 Bda08g00428 Bda-Chr8:4319510 4.79E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15981 PF12165 Alfin 9.10E-69 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00180 - - jre:109018723 453.751