Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00184 ATGGAACTCTCCAATCAAGAAGCTGATATTCCACTTCCAATAAACAGTAGCTATGGCGGGGGACATCAACATGGGCACGGGCATGGGCACGGGCACATGATCCATCACCATGATCACTCCATCAACATTCACTCATCTTCTCCACAAATACCCACCAATAACAATGGACAGTCAAACATACCCACTATCCTAGAGGATCATCAAACCTTAGCAGTAGCAAACTACAAGAGACCATCGTCAACGGTCAAATACAAAGAGTGCTTGAAAAATCATGCAGCTTCAATTGGAGGAAATGCAACAGATGGGTGTGGAGAATTCATGCCTAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACTTGCTCAGCCTGTAATTGCCATAGAAACTTCCATAGAAAAGAAGTTGAAGGAGAGAATGAGTTTCCTCTCCATAGCCAACACCTCAACACCAATAGGGTTGGAAGAAAATTCATCTTCAACCATCATAAGAACATTATAGCTCCAGAAGCTTTAGCCTATTCTACGGCTACAGGCACGTTTATACCCACCAGAACCTTACCAGTTCCCCCTCATCAGATGATAATGTCCTACCAGATGCCATCTCTTCCTTCGGAATCGGACGAGCAAGAAGGCGGCAATGGCGGCGGGGGAGGAGCGGCTAGGGCTCCGCAGGTGGCGAAGAAGAGATTCAGGACAAAATTCAGTCAAGAACAGAAGGAGAAAATGCTAAACTTTGCAGAAAAAATAGGGTGGAAAATGCAGAAGCAAGAAGAGGGTGTGGTGCAGCAGTTCTGCCAAGAGATTGGAGTGAAGAGGAGAGTCCTCAAAGTTTGGATGCACAACAATAAGCATAATCTAGCCACTAAGAATCCATCCTCTTCTGGTTGA 885 45.76 MELSNQEADIPLPINSSYGGGHQHGHGHGHGHMIHHHDHSINIHSSSPQIPTNNNGQSNIPTILEDHQTLAVANYKRPSSTVKYKECLKNHAASIGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEVEGENEFPLHSQHLNTNRVGRKFIFNHHKNIIAPEALAYSTATGTFIPTRTLPVPPHQMIMSYQMPSLPSESDEQEGGNGGGGGAARAPQVAKKRFRTKFSQEQKEKMLNFAEKIGWKMQKQEEGVVQQFCQEIGVKRRVLKVWMHNNKHNLATKNPSSSG 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2514767 2515651 + Bda023387.1 Bda06g00184 7766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00184 294 Pfam ZF-HD protein dimerisation region 82 134 IPR006456 -
Bda06g00184 294 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 226 282 IPR006455 -
Bda06g00184 294 SUPERFAMILY Homeodomain-like 214 285 IPR009057 -
Bda06g00184 294 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 84 133 IPR006456 -
Bda06g00184 294 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 83 134 IPR006456 -
Bda06g00184 294 MobiDBLite consensus disorder prediction 200 228 - -
Bda06g00184 294 Gene3D - 212 288 - -
Bda06g00184 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 288 - -
Bda06g00184 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 29 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01373 Bda-Chr1:49612000 Bda06g00184 Bda-Chr6:2514767 1.10E-47 dispersed
Bda06g00184 Bda-Chr6:2514767 Bda11g01865 Bda-Chr11:53736302 2.45E-56 dispersed
Bda13g01690 Bda-Chr13:40265752 Bda06g00184 Bda-Chr6:2514767 2.44E-51 dispersed
Bda15g00602 Bda-Chr15:9239608 Bda06g00184 Bda-Chr6:2514767 8.72E-21 dispersed
Bda06g00184 Bda-Chr6:2514767 Bda01g01497 Bda-Chr1:50842309 4.90E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15982 PF04770 ZF-HD_dimer 8.50E-30 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00184 - - qsu:112015870 363.999