Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00222 ATGGCCGGTCAATCTGATCCTCATCTCTCTCTATTTTCACCTGAGGAGGTAGAGTTTGTGGCTGAAGATGAGATCGTTGAAATTGTTCCTAACATGAGAATGGATTCCCTCAATTTGATCTGTGGTGATTATGGTCCATTCTTCCCTCAACTAGTGGCTCAAGTACCGTTGTGGCTAGCAATTGCTTTGAAAAAGAGAGGGAAATGTGCTATCCGGTCTCCAGAATGGATGTCTATCGAAAAGTTGACTCAGATTTTAGAAGCAGAACGAGAGTCTCAAGGAGCATTCCAGATACTACCATTTCATTATGTGGAAATCTCAAAGCTTCTTTTCGACCATGCACATAACGACATACAAGACATATACATGGTGAGATCACTTGTCGAAGATATTAAAGATGTTAGGTTTCACAAGGTTGAAACTAGCTTAGAGGCAATTGATACACGAACATCTGCAGTAAAGATAAAGGATTTGTCTGCCATGGAAGTAAATATTGTTCGCCCATTTGTTATCAGATCACTACAAGCAATCTATAATCATGGTAGCCCAGAGTTGGTTCCAGACCAAGAGAGAGTGTCTGGCAGAGTACAGCAAGAGCACAATCCTCATCAAAGAGTAAGTTCTTTTCTAATTTTA 636 40.41 MAGQSDPHLSLFSPEEVEFVAEDEIVEIVPNMRMDSLNLICGDYGPFFPQLVAQVPLWLAIALKKRGKCAIRSPEWMSIEKLTQILEAERESQGAFQILPFHYVEISKLLFDHAHNDIQDIYMVRSLVEDIKDVRFHKVETSLEAIDTRTSAVKIKDLSAMEVNIVRPFVIRSLQAIYNHGSPELVPDQERVSGRVQQEHNPHQRVSSFLIL 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3792777 3794804 + Bda033742 Bda06g00222 7804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00222 212 CDD GINS_A_psf2 66 182 - -
Bda06g00222 212 Gene3D - 78 190 - -
Bda06g00222 212 Gene3D - 12 77 - -
Bda06g00222 212 SUPERFAMILY PriA/YqbF domain 12 71 - -
Bda06g00222 212 PIRSF GINS_PSF2 2 208 IPR007257 GO:0005634|GO:0006260
Bda06g00222 212 Pfam GINS complex protein 54 162 IPR021151 -
Bda06g00222 212 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 1 197 IPR007257 GO:0005634|GO:0006260
Bda06g00222 212 SUPERFAMILY GINS helical bundle-like 74 181 IPR036224 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00222 Bda-Chr6:3792777 Bda09g00575 Bda-Chr9:8036192 2.55E-155 dispersed
Bda11g01457 Bda-Chr11:20372461 Bda06g00222 Bda-Chr6:3792777 4.92E-149 transposed
Bda06g00222 Bda-Chr6:3792777 Bda08g00710 Bda-Chr8:7876721 2.15E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00222 K10733 - csv:101212053 347.436