Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00225 ATGATTTTAGCAGCAGTGTCAGCTCGTATGGCCTTTGGATCGACTAGACTTCTCCTCTCTCGCCCATCATATTCGCTTTACACCCATTCTTCCTCTCCTCCCATCTCACGACAGATACACATGGAGGCTGAGAGAATCAGGACTCAACTGAATGGTTCAGGTATTTGGCGGACCCAAGGCCTCATCGCCGGCAAATGGACTGATGCCTATGATGGGAAAACCATTCAGGTTTACAATCCAGCGACCGGCGAGGCTATAGCAGATGTCCCATGTATGGGTGCAAAGGAGACAAATGATGCTATCTCCTCAGCCTATGATGCTTTTAAGTCTTGGAGCAAGCTTACTGCTACTGAAAGGAGCAAACGCCTCAGAAAATGGTATGATCTCCTGATTGCACACAAAGAAGAGCTTGGACAACTTATAACCTTAGAGCAAGGGAAACCTCTTAAAGAAGCCGTTGGTGAGGTTGGCTATGGAGCCAGCTTCATCGAATTCTATGCAGAAGAAGCTAAACGGGTGTATGGTGATATAATTCCATCCACTTTGGATGATCGCCGACTTTTAGTCATGAAGCAGCCTGTTGGAGTTGTTGGTGCGATTACCCCTTGGAACTTTCCTTTGGCAATGATCACTCGAAAGGTTGGTCCTGCTCTTGCTTGTGGCTGTACTGTTGTTATAAAACCATCTGAACTGACACCACTCACAGCTTTAGCAGCTGCTGAGCTTTCCCTTCAGGCGGGAATTCCCCATGGTGCTGTGAATGTGGTGATGGGAAATGCCTCAGAAATCGGGGGTGCTTTACTTGCCAGCAAGCAGGTAAGAAAGATAACATTCACAGGCTCAACAGCTGTGGGAAAGAAGCTGATGGCTGGTGCTGCAGATACTGTTAAAAAGGTGTCTTTGGAACTTGGTGGTAATGCACCTTGTATTGTCTTTGATGATGCAGACATTGAGGTTGCAGTAAAAGGAACTCTAGCTGCGAAGTTCCGGAATAGTGGGCAAACTTGTGTTTGTGCCAACAGGGTTCTTGTTCAAGAAGGTATATATGAGAAATTTGCGACTGCCTTGTCCAAAGCAGTCCAGAATCTGCAAGTTGGAGATGGCTTCAGTGAAGGTGTGGCTCAGGGTCCTCTCATTAATGACGCAGCAGTGCAAAAGGTTGAATTATTTATTCAAGATGCTGTCTCTAAGGGTGCAAAAGTTCTTCTGGGGGGTCAAAGGCATAAGCTTGGGATGACATTTTATGAGCCTACAGTGCTTACTAGTGTCAAAAATGATATGCTGGTAGCGAGAGAGGAAGTATTTGGTCCTGTGGCGCCTCTTTTGCCGTTCAAAACTGAGGATGAAGCAATTTCCCTTGCAAATGACACCAATGCAGGGTTAGCTGCCTATATATTTACAAACAATGTCCAACGAACTTGGCGTGTTGCTGAATCTCTTGAATATGGTCTTGTTGGCGTCAACGAAGGATTGATTTCTACAGAGGTAGCTCCATTCGGAGGTGTTAAACAGTCGGGGCTTGGTCGGGAAGGTTCCAAATACGGCATGGACGAATATTTGGAGATGAAGTATGTGTGCTTTGGGAATATGAAGAGTGGCGAATGA 1605 46.11 MILAAVSARMAFGSTRLLLSRPSYSLYTHSSSPPISRQIHMEAERIRTQLNGSGIWRTQGLIAGKWTDAYDGKTIQVYNPATGEAIADVPCMGAKETNDAISSAYDAFKSWSKLTATERSKRLRKWYDLLIAHKEELGQLITLEQGKPLKEAVGEVGYGASFIEFYAEEAKRVYGDIIPSTLDDRRLLVMKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPHGAVNVVMGNASEIGGALLASKQVRKITFTGSTAVGKKLMAGAADTVKKVSLELGGNAPCIVFDDADIEVAVKGTLAAKFRNSGQTCVCANRVLVQEGIYEKFATALSKAVQNLQVGDGFSEGVAQGPLINDAAVQKVELFIQDAVSKGAKVLLGGQRHKLGMTFYEPTVLTSVKNDMLVAREEVFGPVAPLLPFKTEDEAISLANDTNAGLAAYIFTNNVQRTWRVAESLEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCFGNMKSGE 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3830672 3839605 + Bda023445.1 Bda06g00225 7807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00225 534 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Bda06g00225 534 CDD ALDH_F5_SSADH_GabD 77 527 - -
Bda06g00225 534 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 77 523 IPR010102 GO:0009013|GO:0009450
Bda06g00225 534 PIRSF ALDH 84 533 IPR012394 GO:0006081
Bda06g00225 534 SUPERFAMILY ALDH-like 54 529 IPR016161 GO:0016491
Bda06g00225 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Bda06g00225 534 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 530 - -
Bda06g00225 534 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 530 - -
Bda06g00225 534 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Bda06g00225 534 Pfam Aldehyde dehydrogenase family 66 525 IPR015590 GO:0016491
Bda06g00225 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 72 519 IPR016162 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00225 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - twl:119988855 840.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01176 Bda-Chr3:13552500 Bda06g00225 Bda-Chr6:3830672 8.01E-63 dispersed
Bda04g00936 Bda-Chr4:59117833 Bda06g00225 Bda-Chr6:3830672 3.29E-53 dispersed
Bda06g00225 Bda-Chr6:3830672 Bda06g01109 Bda-Chr6:39350407 0 dispersed
Bda11g01847 Bda-Chr11:53660569 Bda06g00225 Bda-Chr6:3830672 5.88E-32 dispersed
Bda13g00863 Bda-Chr13:10245442 Bda06g00225 Bda-Chr6:3830672 4.29E-38 dispersed
Bda13g00888 Bda-Chr13:10567516 Bda06g00225 Bda-Chr6:3830672 9.02E-58 dispersed
Bda13g00991 Bda-Chr13:11564679 Bda06g00225 Bda-Chr6:3830672 3.05E-48 dispersed
Bda13g01096 Bda-Chr13:13673350 Bda06g00225 Bda-Chr6:3830672 1.66E-26 dispersed
Bda15g00480 Bda-Chr15:7969205 Bda06g00225 Bda-Chr6:3830672 7.84E-67 dispersed
Bda06g00225 Bda-Chr6:3830672 Bda06g00234 Bda-Chr6:4124204 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00121 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G24503 68.3 7.4e-204 706.8
Bda01g01881 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G24503 68.3 2.4e-186 648.7
Bda11g01261 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.0 7.5e-156 547.4
Bda01g02225 . 30 470 Aldehyde Dehydrogenase Gene Family AT3G24503 55.4 1.7e-139 493.0
Bda11g01261 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 77.4 8.1e-249 856.3
Bda01g02225 . 1 470 Aldehyde Dehydrogenase Gene Family AT3G48000 77.6 3.3e-218 754.6
Bda11g00121 . 20 504 Aldehyde Dehydrogenase Gene Family AT3G48000 54.0 4.1e-160 561.6
Bda01g01881 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 53.5 2.8e-148 522.3
Bda01g02225 . 1 375 Aldehyde Dehydrogenase Gene Family AT1G23800 78.6 2.9e-174 608.2
Bda11g01261 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 4.3e-170 594.3
Bda11g00121 . 20 348 Aldehyde Dehydrogenase Gene Family AT1G23800 55.3 3.0e-102 369.0
Bda01g01881 CCT 3 308 Aldehyde Dehydrogenase Gene Family AT1G23800 55.9 4.7e-92 335.1
Bda11g01389 . 49 558 Aldehyde Dehydrogenase Gene Family AT4G34240 67.8 3.8e-198 688.0
Bda03g00014 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 62.8 3.7e-177 618.2
Bda03g00014 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 1.4e-179 625.9
Bda11g01389 . 145 554 Aldehyde Dehydrogenase Gene Family AT1G44170 67.6 1.1e-160 563.1
Bda02g00634 . 67 497 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 1.4e-115 413.3
Bda11g01847 . 1 501 Aldehyde Dehydrogenase Gene Family AT4G36250 61.2 1.6e-184 642.5
Bda02g00634 . 1 499 Aldehyde Dehydrogenase Gene Family AT4G36250 54.4 1.1e-161 566.6
Bda06g00234 . 1 530 Aldehyde Dehydrogenase Gene Family AT1G79440 77.5 1.5e-236 815.5
Bda06g00225 . 1 530 Aldehyde Dehydrogenase Gene Family AT1G79440 77.4 4.5e-236 813.9
Bda06g01109 . 2 484 Aldehyde Dehydrogenase Gene Family AT1G79440 74.9 8.8e-216 746.5
Bda15g00480 . 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.1 9.9e-232 799.7
Bda06g00575 . 1 520 Aldehyde Dehydrogenase Gene Family AT1G74920 77.9 1.9e-244 841.6
Bda06g00575 . 1 522 Aldehyde Dehydrogenase Gene Family AT3G48170 75.9 6.0e-246 846.7
Bda11g00046 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.9 3.7e-264 907.1
Bda13g01096 . 17 275 Aldehyde Dehydrogenase Gene Family AT2G24270 75.1 2.9e-115 412.5
Bda11g01689 . 1 554 Aldehyde Dehydrogenase Gene Family AT5G62530 79.5 8.3e-273 936.0
Bda03g01176 . 4 588 Aldehyde Dehydrogenase Gene Family AT3G66658 80.2 3.5e-285 977.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00225 Bda_Chr06 FPKM 2.455927 3.193011 7.282031 6.337821 0.82741 1.022556 0.972221 21.499567 24.93786