Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00225 ATGATTTTAGCAGCAGTGTCAGCTCGTATGGCCTTTGGATCGACTAGACTTCTCCTCTCTCGCCCATCATATTCGCTTTACACCCATTCTTCCTCTCCTCCCATCTCACGACAGATACACATGGAGGCTGAGAGAATCAGGACTCAACTGAATGGTTCAGGTATTTGGCGGACCCAAGGCCTCATCGCCGGCAAATGGACTGATGCCTATGATGGGAAAACCATTCAGGTTTACAATCCAGCGACCGGCGAGGCTATAGCAGATGTCCCATGTATGGGTGCAAAGGAGACAAATGATGCTATCTCCTCAGCCTATGATGCTTTTAAGTCTTGGAGCAAGCTTACTGCTACTGAAAGGAGCAAACGCCTCAGAAAATGGTATGATCTCCTGATTGCACACAAAGAAGAGCTTGGACAACTTATAACCTTAGAGCAAGGGAAACCTCTTAAAGAAGCCGTTGGTGAGGTTGGCTATGGAGCCAGCTTCATCGAATTCTATGCAGAAGAAGCTAAACGGGTGTATGGTGATATAATTCCATCCACTTTGGATGATCGCCGACTTTTAGTCATGAAGCAGCCTGTTGGAGTTGTTGGTGCGATTACCCCTTGGAACTTTCCTTTGGCAATGATCACTCGAAAGGTTGGTCCTGCTCTTGCTTGTGGCTGTACTGTTGTTATAAAACCATCTGAACTGACACCACTCACAGCTTTAGCAGCTGCTGAGCTTTCCCTTCAGGCGGGAATTCCCCATGGTGCTGTGAATGTGGTGATGGGAAATGCCTCAGAAATCGGGGGTGCTTTACTTGCCAGCAAGCAGGTAAGAAAGATAACATTCACAGGCTCAACAGCTGTGGGAAAGAAGCTGATGGCTGGTGCTGCAGATACTGTTAAAAAGGTGTCTTTGGAACTTGGTGGTAATGCACCTTGTATTGTCTTTGATGATGCAGACATTGAGGTTGCAGTAAAAGGAACTCTAGCTGCGAAGTTCCGGAATAGTGGGCAAACTTGTGTTTGTGCCAACAGGGTTCTTGTTCAAGAAGGTATATATGAGAAATTTGCGACTGCCTTGTCCAAAGCAGTCCAGAATCTGCAAGTTGGAGATGGCTTCAGTGAAGGTGTGGCTCAGGGTCCTCTCATTAATGACGCAGCAGTGCAAAAGGTTGAATTATTTATTCAAGATGCTGTCTCTAAGGGTGCAAAAGTTCTTCTGGGGGGTCAAAGGCATAAGCTTGGGATGACATTTTATGAGCCTACAGTGCTTACTAGTGTCAAAAATGATATGCTGGTAGCGAGAGAGGAAGTATTTGGTCCTGTGGCGCCTCTTTTGCCGTTCAAAACTGAGGATGAAGCAATTTCCCTTGCAAATGACACCAATGCAGGGTTAGCTGCCTATATATTTACAAACAATGTCCAACGAACTTGGCGTGTTGCTGAATCTCTTGAATATGGTCTTGTTGGCGTCAACGAAGGATTGATTTCTACAGAGGTAGCTCCATTCGGAGGTGTTAAACAGTCGGGGCTTGGTCGGGAAGGTTCCAAATACGGCATGGACGAATATTTGGAGATGAAGTATGTGTGCTTTGGGAATATGAAGAGTGGCGAATGA 1605 46.11 MILAAVSARMAFGSTRLLLSRPSYSLYTHSSSPPISRQIHMEAERIRTQLNGSGIWRTQGLIAGKWTDAYDGKTIQVYNPATGEAIADVPCMGAKETNDAISSAYDAFKSWSKLTATERSKRLRKWYDLLIAHKEELGQLITLEQGKPLKEAVGEVGYGASFIEFYAEEAKRVYGDIIPSTLDDRRLLVMKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPHGAVNVVMGNASEIGGALLASKQVRKITFTGSTAVGKKLMAGAADTVKKVSLELGGNAPCIVFDDADIEVAVKGTLAAKFRNSGQTCVCANRVLVQEGIYEKFATALSKAVQNLQVGDGFSEGVAQGPLINDAAVQKVELFIQDAVSKGAKVLLGGQRHKLGMTFYEPTVLTSVKNDMLVAREEVFGPVAPLLPFKTEDEAISLANDTNAGLAAYIFTNNVQRTWRVAESLEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCFGNMKSGE 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3830672 3839605 + Bda023445.1 Bda06g00225 7807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00225 534 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Bda06g00225 534 CDD ALDH_F5_SSADH_GabD 77 527 - -
Bda06g00225 534 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 77 523 IPR010102 GO:0009013|GO:0009450
Bda06g00225 534 PIRSF ALDH 84 533 IPR012394 GO:0006081
Bda06g00225 534 SUPERFAMILY ALDH-like 54 529 IPR016161 GO:0016491
Bda06g00225 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Bda06g00225 534 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 530 - -
Bda06g00225 534 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 530 - -
Bda06g00225 534 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Bda06g00225 534 Pfam Aldehyde dehydrogenase family 66 525 IPR015590 GO:0016491
Bda06g00225 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 72 519 IPR016162 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01176 Bda-Chr3:13552500 Bda06g00225 Bda-Chr6:3830672 8.01E-63 dispersed
Bda04g00936 Bda-Chr4:59117833 Bda06g00225 Bda-Chr6:3830672 3.29E-53 dispersed
Bda06g00225 Bda-Chr6:3830672 Bda06g01109 Bda-Chr6:39350407 0 dispersed
Bda11g01847 Bda-Chr11:53660569 Bda06g00225 Bda-Chr6:3830672 5.88E-32 dispersed
Bda13g00863 Bda-Chr13:10245442 Bda06g00225 Bda-Chr6:3830672 4.29E-38 dispersed
Bda13g00888 Bda-Chr13:10567516 Bda06g00225 Bda-Chr6:3830672 9.02E-58 dispersed
Bda13g00991 Bda-Chr13:11564679 Bda06g00225 Bda-Chr6:3830672 3.05E-48 dispersed
Bda13g01096 Bda-Chr13:13673350 Bda06g00225 Bda-Chr6:3830672 1.66E-26 dispersed
Bda15g00480 Bda-Chr15:7969205 Bda06g00225 Bda-Chr6:3830672 7.84E-67 dispersed
Bda06g00225 Bda-Chr6:3830672 Bda06g00234 Bda-Chr6:4124204 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00225 K17761 - twl:119988855 840.106