Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda06g00234 | ATGATTTTAGCAGCAGTGTCAGCTCGTATGGCCTTTGGATCGACTAGACTTCTCCTCTCTCGCCCATCATATTCGCTTTACACCCATTCTTCCTCTCCTCCCATCTCACGACAGATACACATGGAGGCTGAGAGAATCAGGACTCAACTGAATGGTTCAGGTATTTGGCGGACCCAAGGCCTCATCGCCGGCAAATGGACTGATGCCTATGATGGGAAAACCATTAAGGTTTACAATCCAGCGACCGGCGAGGCTATAGCAGATGTCCCATGTATGGGTGCAAAGGAGACAAATGATGCTATCTCCTCAGCCTATGATGCTTTTAAGTCTTGGAGCAAGCTTACTGCTACTGAAAGGAGCAAACGCCTCAGAAAATGGTATGATCTACTGATTGCACACAAAGAAGAGCTTGGACAACTTATAACCTTAGAGCAAGGGAAACCTCTTAAAGAAGCCGTTGGTGAGGTTGGCTATGGAGCCAGCTTCATCGAATTCTATGCAGAAGAAGCTAAACGGGTGTATGGTGATATAATTCCATCCACTTTGGATGATCGCCGACTTTTAGTCATGAAGCAGCCTGTTGGAGTTGTTGGTGCGATTACCCCTTGGAACTTTCCTTTGGCAATGATCACTCGAAAGGTTGGTCCTGCTCTTGCTTGTGGCTGTACTGTTGTTATAAAACCATCTGAACTGACACCACTCACAGCTTTAGCAGCTGCTGAGCTTTCCCTTCAGGCGGGAATTCCCCATGGTGCTGTGAATGTGGTGATGGGAAATGCCTCAGAAATCGGGGGTGCTTTACTTGCCAGCAAGCAGGTAAGAAAGATAACATTCACAGGCTCAACAGCTGTGGGAAAGAAGCTGATGGCTGGTGCTGCAGATACTGTTAAAAAGGTGTCTTTGGAACTTGGTGGTAATGCACCTTGTATTGTCTTTGATGATGCAGACATTGAGGTTGCAGTAAAAGGAACTCTAGCTGCGAAGTTCCGGAATAGTGGGCAAACTTGTGTTTGTGCCAACAGGGTTCTTGTTCAAGAAGGTATATATGAGAAATTTGCGACTGCCTTGTCCAAAGCAGTCCAGAATCTGCAAGTTGGAGATGGCTTCAGTGAAGGTGTGGCTCAGGGTCCTCTCATTAACGACGCAGCAGTGCAAAAGGTTGAATTATTTATTCAAGATGCTGTCTCTAAGGGTGCAAAAGTTCTTCTGGGGGGTCAAAGGCATAAGCTTGGGATGACATTTTATGAGCCTACAGTGCTTACTAGTGTCAAAAATGATATGCTGGTAGCGAGAGAGGAAGTATTTGGTCCTGTGGCGCCTCTTTTGCCGTTCAAAACTGAGGATGAAGCAATTTCCCTTGCAAATGACACCAATGCAGGGTTAGCTGCCTATATATTTACAAACAATGTCCAACGAACTTGGCGTGTTGCTGAATCTCTTGAATATGGTCTTGTTGGCGTCAACGAAGGATTGATTTCTACAGAGGTAGCTCCATTCGGAGGTGTTAAACAGTCGGGGCTTGGTCGGGAAGGTTCCAAATACGGCATGGACGAATATTTGGAGATGAAGTATGTGTGCTTTGGGAATATGAAGAGTGGCGAATGA | 1605 | 46.04 | MILAAVSARMAFGSTRLLLSRPSYSLYTHSSSPPISRQIHMEAERIRTQLNGSGIWRTQGLIAGKWTDAYDGKTIKVYNPATGEAIADVPCMGAKETNDAISSAYDAFKSWSKLTATERSKRLRKWYDLLIAHKEELGQLITLEQGKPLKEAVGEVGYGASFIEFYAEEAKRVYGDIIPSTLDDRRLLVMKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPHGAVNVVMGNASEIGGALLASKQVRKITFTGSTAVGKKLMAGAADTVKKVSLELGGNAPCIVFDDADIEVAVKGTLAAKFRNSGQTCVCANRVLVQEGIYEKFATALSKAVQNLQVGDGFSEGVAQGPLINDAAVQKVELFIQDAVSKGAKVLLGGQRHKLGMTFYEPTVLTSVKNDMLVAREEVFGPVAPLLPFKTEDEAISLANDTNAGLAAYIFTNNVQRTWRVAESLEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCFGNMKSGE | 534 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4124204 | 4142926 | - | Bda023458.1 | Bda06g00234 | 7816 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda06g00234 | 534 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 301 | 308 | IPR029510 | GO:0016491 | |
| Bda06g00234 | 534 | CDD | ALDH_F5_SSADH_GabD | 77 | 527 | - | - | |
| Bda06g00234 | 534 | Pfam | Aldehyde dehydrogenase family | 66 | 525 | IPR015590 | GO:0016491 | |
| Bda06g00234 | 534 | TIGRFAM | SSADH: succinate-semialdehyde dehydrogenase | 77 | 523 | IPR010102 | GO:0009013|GO:0009450 | |
| Bda06g00234 | 534 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 55 | 530 | - | - | |
| Bda06g00234 | 534 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 55 | 530 | - | - | |
| Bda06g00234 | 534 | PIRSF | ALDH | 85 | 533 | IPR012394 | GO:0006081 | |
| Bda06g00234 | 534 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 305 | 494 | IPR016163 | GO:0016620 | |
| Bda06g00234 | 534 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 72 | 519 | IPR016162 | GO:0016491 | |
| Bda06g00234 | 534 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 329 | 340 | IPR016160 | GO:0016491 | |
| Bda06g00234 | 534 | SUPERFAMILY | ALDH-like | 54 | 529 | IPR016161 | GO:0016491 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda06g00234 | Bda-Chr6:4124204 | Bda11g01261 | Bda-Chr11:13221454 | 1.24E-106 | dispersed | |
| Bda06g00225 | Bda-Chr6:3830672 | Bda06g00234 | Bda-Chr6:4124204 | 0 | proximal | |
| Bda02g00634 | Bda-Chr2:47249057 | Bda06g00234 | Bda-Chr6:4124204 | 2.07E-36 | transposed | |
| Bda03g00014 | Bda-Chr3:343996 | Bda06g00234 | Bda-Chr6:4124204 | 3.60E-43 | transposed | |
| Bda03g01176 | Bda-Chr3:13552500 | Bda06g00234 | Bda-Chr6:4124204 | 3.26E-62 | transposed | |
| Bda04g00689 | Bda-Chr4:55638748 | Bda06g00234 | Bda-Chr6:4124204 | 6.95E-17 | transposed | |
| Bda04g00936 | Bda-Chr4:59117833 | Bda06g00234 | Bda-Chr6:4124204 | 3.16E-53 | transposed | |
| Bda06g01109 | Bda-Chr6:39350407 | Bda06g00234 | Bda-Chr6:4124204 | 0 | transposed | |
| Bda11g00046 | Bda-Chr11:551020 | Bda06g00234 | Bda-Chr6:4124204 | 3.97E-67 | transposed | |
| Bda11g01389 | Bda-Chr11:17414737 | Bda06g00234 | Bda-Chr6:4124204 | 2.04E-43 | transposed | |
| Bda11g01847 | Bda-Chr11:53660569 | Bda06g00234 | Bda-Chr6:4124204 | 6.35E-32 | transposed | |
| Bda13g00991 | Bda-Chr13:11564679 | Bda06g00234 | Bda-Chr6:4124204 | 2.76E-48 | transposed | |
| Bda13g01096 | Bda-Chr13:13673350 | Bda06g00234 | Bda-Chr6:4124204 | 2.03E-26 | transposed | |
| Bda13g00727 | Bda-Chr13:8750328 | Bda06g00234 | Bda-Chr6:4124204 | 1.06E-155 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda06g00234 | K17761 | - | twl:119988855 | 841.647 |