Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00254 ATCATGGATTTCAAGCATAACATTCGCAATATGTCTGTTATTGCACATGTTGATCATGGAAAGTCAACACTGACTGACTCTCTAGTGGCTGCCGCTGGTATAATTGCACAAGAAGCTGCTGGCGATGTTAGGATTATGGATACACAAAAGGATGAGGCTGACCGTGGTATAACCATCAAATCCACTGGTATCTCTCTCTACTATGAGATGGAAGAGCAGACCTTGAAGAATTACCTAGGAGAGCGACAGGGAAATGAATATCTCATCAATCTCATTGATTCTCCTGGCCATGTTGACTTCTCATCTGAGGTCACAGCTGCTCTGCGTATTACCGATGGTGCACTTGTGGTGGTGGACTGTGTGGAGGGGGTATGTGTCCAAACCGAAACGGTATTACGACAGGCTTTAGGAGAGAGGATTAGGCCAATTCTCACTCTTAACAAGATGGATAGGTGCTTCTTGGAACTTCAGATCGACGGGGAGGAAGCTTATCGGCTATTCCAAAGGGTTATCGAAAATACTAATGTGATTATGGCAACATATGAGGATCCCCTCCTTGGTGATGTTCAGGTCTACCCTGAGAAAGGGACAGTTTCCTTCTCTGCTGGTTTGCACGGTTGGGCTTTCACTCTTACAAACTTTGCGAAGATGTATGCCTCTAAATTTGGGGTTGATGAGGCAAAAATGATGGAGCGTCTTTGGGGAGAGAATTTCTTTGACCCTTCAACAAAAAAATGGACCAGCAAAAATACTGGTTCTCCTACTTGCAAGCGGGGCTTTGTTCAACTCTGCTACGAACCTATCATGCGGATTATTTCAATTTGCTTGGGGGATCAGAAGGATGAGTTGTGGCCATTGTTGCAAAAGCTTGGAGTAGTTATCAAGGCTGAAGAGAGAGATCTAAGAGGGAAGGCGTTGATGAAGCGAGTCATGCAGACATGGCTGCCAGCAAGCAATGCACTATTGGAAATGATGATCTTTCATCTACCTTCACCTGCGCAGGCTCAAAAGTACCGTGTCGAGAACTTGTACGAGGGACCTATGGACGACATTTATGCTAATGCGATTAGAAATTGTGACCCTGATGGCCCTCTTATGCTTTACGTGTCGAAAATGATACCAGCCTCAGATAAAGGACGATTTTTTGCTTTCGGCCGAGTCTTCTCTGGTAAAGTCTCAACTGGAATGAAGGTTAGAATCATGGGTCCAAATTATGTCCCTGGGAATTGGCAAAAAAAGGACTTGTACGTGAAGAGTGTGCAGAGAACTGTGATTTGGATGGGAAAGAAGCAGGAAACTGTGGAGGATGTTCCTTGCGGTAACATTGTTGCAATGGTTGGTTTGGACCAGTTCATCACAAAAAATGCTACTTTGACAAATGAAAAGGAAGTCGGTGCTCATTCAATGCGAGCAATGAAGTTTTCAGTTTCGCCTGTTGTTCGCGTTGCAATTCAGTGCAAGGTGGCTTCTGACCTTCCCAAGCTTGTTGAAGGTCTGAAGCGCCTCGAAAAATCTGATCCCATGGTTGTTTGTGAAATTGAGGAGTCTGGCGAGTACATTGTGGCCGGTGCAGGAGAACTCCACCTCGAGATATGCTTGAAAGATCTGCAAGAAGATTTCATGGGAGGAGCCGAGATCATAAAATCTGATCCTGTTGTTTCTTTTCGCGAAACTGTCTTAGAGAGGTCCAGCCGCGTTGTGATGAGTAAATCGCCGAACAAACACAACCGCTTATACATGGAAGCACGTCCGATGGAGGAAGGACTTGCGGAATTCATTGATGACGGACGAATCAGTCCAAGAGATGACCCAAAGGCTCGGTCGAAGATCATGTCAGACGCTTTCGGCTGGGACAAGGAAACGACTAAGAAGATTTGGTGCTTCGGCCCGGAGACCCGCGGCCCTAACATGGTTGTTAATATGTGTAAAGGGGTTGACTACCTTAATGAAATTAAAGATTCTGTAACTCTTGGTTTCCAGTGGGCTTCCAAGGAAGGAGCATTGGCTGAAGAAAACATGAGGGGTATCTGCTTTGAGCTCTGTGATGCAGTTCTTCACTCTGATGGAATTCACAGAGGAGGTGGTCAGATCATTCCGACTGCTAGGCGTGTCGTCTATGCCGCCCAACTGACAGCCAAACCCAGGTTCTTAGAGCCTGTGTACTTGGTGGAAATCCAGGCTTCTGAGCAAGCTCTGGGCGGTGTTTACAGTGTTCTTAACCAGAGACGTGGACATGTTTTCGAAGAATTACAGCGGCCGGGCACTCCGTTGTACAACATCAAGGCATACCTGCCTGTCATCGAGTCGTTCGGATTCTCGAATATGCTGAGAGCTGCAACTTCTGGACAGGCTTTTCCGCAAGCCGTGTTTGATCATTGGGAAATCATGCCATCTGATCCATTAGAAGATGGAACTCCGGCTGCACAGCTTGCTGCCAAAGTTCGGAAGAGGAAAGGCTTGAGAGAACAGAGAACCCCACTCTCTGAGTACGAGGACAAGCTGTAG 2505 46.55 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEAAGDVRIMDTQKDEADRGITIKSTGISLYYEMEEQTLKNYLGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPILTLNKMDRCFLELQIDGEEAYRLFQRVIENTNVIMATYEDPLLGDVQVYPEKGTVSFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPSTKKWTSKNTGSPTCKRGFVQLCYEPIMRIISICLGDQKDELWPLLQKLGVVIKAEERDLRGKALMKRVMQTWLPASNALLEMMIFHLPSPAQAQKYRVENLYEGPMDDIYANAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGNWQKKDLYVKSVQRTVIWMGKKQETVEDVPCGNIVAMVGLDQFITKNATLTNEKEVGAHSMRAMKFSVSPVVRVAIQCKVASDLPKLVEGLKRLEKSDPMVVCEIEESGEYIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSSRVVMSKSPNKHNRLYMEARPMEEGLAEFIDDGRISPRDDPKARSKIMSDAFGWDKETTKKIWCFGPETRGPNMVVNMCKGVDYLNEIKDSVTLGFQWASKEGALAEENMRGICFELCDAVLHSDGIHRGGGQIIPTARRVVYAAQLTAKPRFLEPVYLVEIQASEQALGGVYSVLNQRRGHVFEELQRPGTPLYNIKAYLPVIESFGFSNMLRAATSGQAFPQAVFDHWEIMPSDPLEDGTPAAQLAAKVRKRKGLREQRTPLSEYEDKL 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4429824 4432688 + Bda023481.1 Bda06g00254 7836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00254 834 CDD EF2_II 364 461 - -
Bda06g00254 834 Pfam Elongation factor Tu domain 2 383 458 IPR004161 GO:0005525
Bda06g00254 834 SUPERFAMILY EF-G C-terminal domain-like 718 826 IPR035647 -
Bda06g00254 834 CDD EF2_snRNP_III 478 550 - -
Bda06g00254 834 Gene3D - 1 226 IPR027417 -
Bda06g00254 834 Pfam Elongation Factor G, domain III 478 540 IPR041095 -
Bda06g00254 834 Gene3D Elongation Factor G (Translational Gtpase), domain 3 477 554 - -
Bda06g00254 834 SUPERFAMILY Translation proteins 331 463 IPR009000 -
Bda06g00254 834 MobiDBLite consensus disorder prediction 812 834 - -
Bda06g00254 834 Gene3D Translation factors 332 475 - -
Bda06g00254 834 Pfam Elongation factor G, domain IV 597 713 IPR005517 GO:0005525
Bda06g00254 834 SUPERFAMILY Ribosomal protein S5 domain 2-like 553 717 IPR020568 -
Bda06g00254 834 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 IPR031157 -
Bda06g00254 834 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 6 333 IPR000795 GO:0003924|GO:0005525
Bda06g00254 834 CDD EF2 9 219 - -
Bda06g00254 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 330 IPR027417 -
Bda06g00254 834 PRINTS GTP-binding elongation factor signature 10 23 IPR000795 GO:0003924|GO:0005525
Bda06g00254 834 PRINTS GTP-binding elongation factor signature 54 62 IPR000795 GO:0003924|GO:0005525
Bda06g00254 834 PRINTS GTP-binding elongation factor signature 106 117 IPR000795 GO:0003924|GO:0005525
Bda06g00254 834 PRINTS GTP-binding elongation factor signature 90 100 IPR000795 GO:0003924|GO:0005525
Bda06g00254 834 PRINTS GTP-binding elongation factor signature 142 151 IPR000795 GO:0003924|GO:0005525
Bda06g00254 834 Pfam Elongation factor G C-terminus 716 802 IPR000640 -
Bda06g00254 834 CDD eEF2_snRNP_like_C 718 797 - -
Bda06g00254 834 SMART EFG_IV_2 597 713 IPR005517 GO:0005525
Bda06g00254 834 Gene3D - 714 834 - -
Bda06g00254 834 SMART EFG_C_a 715 804 IPR000640 -
Bda06g00254 834 TIGRFAM small_GTP: small GTP-binding protein domain 9 153 IPR005225 GO:0005525
Bda06g00254 834 Gene3D - 560 713 IPR014721 -
Bda06g00254 834 PANTHER - 1 833 - -
Bda06g00254 834 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 833 - -
Bda06g00254 834 SUPERFAMILY EF-G C-terminal domain-like 475 551 IPR035647 -
Bda06g00254 834 Pfam Elongation factor Tu GTP binding domain 6 331 IPR000795 GO:0003924|GO:0005525
Bda06g00254 834 CDD aeEF2_snRNP_like_IV 550 722 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00254 Bda-Chr6:4429824 Bda15g00849 Bda-Chr15:13249945 0 dispersed
Bda06g00254 Bda-Chr6:4429824 Bda04g01109 Bda-Chr4:61986941 1.04E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00254 K03234 - sind:105166103 1506.12