Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda06g00254 | ATCATGGATTTCAAGCATAACATTCGCAATATGTCTGTTATTGCACATGTTGATCATGGAAAGTCAACACTGACTGACTCTCTAGTGGCTGCCGCTGGTATAATTGCACAAGAAGCTGCTGGCGATGTTAGGATTATGGATACACAAAAGGATGAGGCTGACCGTGGTATAACCATCAAATCCACTGGTATCTCTCTCTACTATGAGATGGAAGAGCAGACCTTGAAGAATTACCTAGGAGAGCGACAGGGAAATGAATATCTCATCAATCTCATTGATTCTCCTGGCCATGTTGACTTCTCATCTGAGGTCACAGCTGCTCTGCGTATTACCGATGGTGCACTTGTGGTGGTGGACTGTGTGGAGGGGGTATGTGTCCAAACCGAAACGGTATTACGACAGGCTTTAGGAGAGAGGATTAGGCCAATTCTCACTCTTAACAAGATGGATAGGTGCTTCTTGGAACTTCAGATCGACGGGGAGGAAGCTTATCGGCTATTCCAAAGGGTTATCGAAAATACTAATGTGATTATGGCAACATATGAGGATCCCCTCCTTGGTGATGTTCAGGTCTACCCTGAGAAAGGGACAGTTTCCTTCTCTGCTGGTTTGCACGGTTGGGCTTTCACTCTTACAAACTTTGCGAAGATGTATGCCTCTAAATTTGGGGTTGATGAGGCAAAAATGATGGAGCGTCTTTGGGGAGAGAATTTCTTTGACCCTTCAACAAAAAAATGGACCAGCAAAAATACTGGTTCTCCTACTTGCAAGCGGGGCTTTGTTCAACTCTGCTACGAACCTATCATGCGGATTATTTCAATTTGCTTGGGGGATCAGAAGGATGAGTTGTGGCCATTGTTGCAAAAGCTTGGAGTAGTTATCAAGGCTGAAGAGAGAGATCTAAGAGGGAAGGCGTTGATGAAGCGAGTCATGCAGACATGGCTGCCAGCAAGCAATGCACTATTGGAAATGATGATCTTTCATCTACCTTCACCTGCGCAGGCTCAAAAGTACCGTGTCGAGAACTTGTACGAGGGACCTATGGACGACATTTATGCTAATGCGATTAGAAATTGTGACCCTGATGGCCCTCTTATGCTTTACGTGTCGAAAATGATACCAGCCTCAGATAAAGGACGATTTTTTGCTTTCGGCCGAGTCTTCTCTGGTAAAGTCTCAACTGGAATGAAGGTTAGAATCATGGGTCCAAATTATGTCCCTGGGAATTGGCAAAAAAAGGACTTGTACGTGAAGAGTGTGCAGAGAACTGTGATTTGGATGGGAAAGAAGCAGGAAACTGTGGAGGATGTTCCTTGCGGTAACATTGTTGCAATGGTTGGTTTGGACCAGTTCATCACAAAAAATGCTACTTTGACAAATGAAAAGGAAGTCGGTGCTCATTCAATGCGAGCAATGAAGTTTTCAGTTTCGCCTGTTGTTCGCGTTGCAATTCAGTGCAAGGTGGCTTCTGACCTTCCCAAGCTTGTTGAAGGTCTGAAGCGCCTCGAAAAATCTGATCCCATGGTTGTTTGTGAAATTGAGGAGTCTGGCGAGTACATTGTGGCCGGTGCAGGAGAACTCCACCTCGAGATATGCTTGAAAGATCTGCAAGAAGATTTCATGGGAGGAGCCGAGATCATAAAATCTGATCCTGTTGTTTCTTTTCGCGAAACTGTCTTAGAGAGGTCCAGCCGCGTTGTGATGAGTAAATCGCCGAACAAACACAACCGCTTATACATGGAAGCACGTCCGATGGAGGAAGGACTTGCGGAATTCATTGATGACGGACGAATCAGTCCAAGAGATGACCCAAAGGCTCGGTCGAAGATCATGTCAGACGCTTTCGGCTGGGACAAGGAAACGACTAAGAAGATTTGGTGCTTCGGCCCGGAGACCCGCGGCCCTAACATGGTTGTTAATATGTGTAAAGGGGTTGACTACCTTAATGAAATTAAAGATTCTGTAACTCTTGGTTTCCAGTGGGCTTCCAAGGAAGGAGCATTGGCTGAAGAAAACATGAGGGGTATCTGCTTTGAGCTCTGTGATGCAGTTCTTCACTCTGATGGAATTCACAGAGGAGGTGGTCAGATCATTCCGACTGCTAGGCGTGTCGTCTATGCCGCCCAACTGACAGCCAAACCCAGGTTCTTAGAGCCTGTGTACTTGGTGGAAATCCAGGCTTCTGAGCAAGCTCTGGGCGGTGTTTACAGTGTTCTTAACCAGAGACGTGGACATGTTTTCGAAGAATTACAGCGGCCGGGCACTCCGTTGTACAACATCAAGGCATACCTGCCTGTCATCGAGTCGTTCGGATTCTCGAATATGCTGAGAGCTGCAACTTCTGGACAGGCTTTTCCGCAAGCCGTGTTTGATCATTGGGAAATCATGCCATCTGATCCATTAGAAGATGGAACTCCGGCTGCACAGCTTGCTGCCAAAGTTCGGAAGAGGAAAGGCTTGAGAGAACAGAGAACCCCACTCTCTGAGTACGAGGACAAGCTGTAG | 2505 | 46.55 | IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEAAGDVRIMDTQKDEADRGITIKSTGISLYYEMEEQTLKNYLGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPILTLNKMDRCFLELQIDGEEAYRLFQRVIENTNVIMATYEDPLLGDVQVYPEKGTVSFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPSTKKWTSKNTGSPTCKRGFVQLCYEPIMRIISICLGDQKDELWPLLQKLGVVIKAEERDLRGKALMKRVMQTWLPASNALLEMMIFHLPSPAQAQKYRVENLYEGPMDDIYANAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGNWQKKDLYVKSVQRTVIWMGKKQETVEDVPCGNIVAMVGLDQFITKNATLTNEKEVGAHSMRAMKFSVSPVVRVAIQCKVASDLPKLVEGLKRLEKSDPMVVCEIEESGEYIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSSRVVMSKSPNKHNRLYMEARPMEEGLAEFIDDGRISPRDDPKARSKIMSDAFGWDKETTKKIWCFGPETRGPNMVVNMCKGVDYLNEIKDSVTLGFQWASKEGALAEENMRGICFELCDAVLHSDGIHRGGGQIIPTARRVVYAAQLTAKPRFLEPVYLVEIQASEQALGGVYSVLNQRRGHVFEELQRPGTPLYNIKAYLPVIESFGFSNMLRAATSGQAFPQAVFDHWEIMPSDPLEDGTPAAQLAAKVRKRKGLREQRTPLSEYEDKL | 834 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4429824 | 4432688 | + | Bda023481.1 | Bda06g00254 | 7836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda06g00254 | 834 | CDD | EF2_II | 364 | 461 | - | - | |
Bda06g00254 | 834 | Pfam | Elongation factor Tu domain 2 | 383 | 458 | IPR004161 | GO:0005525 | |
Bda06g00254 | 834 | SUPERFAMILY | EF-G C-terminal domain-like | 718 | 826 | IPR035647 | - | |
Bda06g00254 | 834 | CDD | EF2_snRNP_III | 478 | 550 | - | - | |
Bda06g00254 | 834 | Gene3D | - | 1 | 226 | IPR027417 | - | |
Bda06g00254 | 834 | Pfam | Elongation Factor G, domain III | 478 | 540 | IPR041095 | - | |
Bda06g00254 | 834 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 477 | 554 | - | - | |
Bda06g00254 | 834 | SUPERFAMILY | Translation proteins | 331 | 463 | IPR009000 | - | |
Bda06g00254 | 834 | MobiDBLite | consensus disorder prediction | 812 | 834 | - | - | |
Bda06g00254 | 834 | Gene3D | Translation factors | 332 | 475 | - | - | |
Bda06g00254 | 834 | Pfam | Elongation factor G, domain IV | 597 | 713 | IPR005517 | GO:0005525 | |
Bda06g00254 | 834 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 553 | 717 | IPR020568 | - | |
Bda06g00254 | 834 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 47 | 62 | IPR031157 | - | |
Bda06g00254 | 834 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 6 | 333 | IPR000795 | GO:0003924|GO:0005525 | |
Bda06g00254 | 834 | CDD | EF2 | 9 | 219 | - | - | |
Bda06g00254 | 834 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 330 | IPR027417 | - | |
Bda06g00254 | 834 | PRINTS | GTP-binding elongation factor signature | 10 | 23 | IPR000795 | GO:0003924|GO:0005525 | |
Bda06g00254 | 834 | PRINTS | GTP-binding elongation factor signature | 54 | 62 | IPR000795 | GO:0003924|GO:0005525 | |
Bda06g00254 | 834 | PRINTS | GTP-binding elongation factor signature | 106 | 117 | IPR000795 | GO:0003924|GO:0005525 | |
Bda06g00254 | 834 | PRINTS | GTP-binding elongation factor signature | 90 | 100 | IPR000795 | GO:0003924|GO:0005525 | |
Bda06g00254 | 834 | PRINTS | GTP-binding elongation factor signature | 142 | 151 | IPR000795 | GO:0003924|GO:0005525 | |
Bda06g00254 | 834 | Pfam | Elongation factor G C-terminus | 716 | 802 | IPR000640 | - | |
Bda06g00254 | 834 | CDD | eEF2_snRNP_like_C | 718 | 797 | - | - | |
Bda06g00254 | 834 | SMART | EFG_IV_2 | 597 | 713 | IPR005517 | GO:0005525 | |
Bda06g00254 | 834 | Gene3D | - | 714 | 834 | - | - | |
Bda06g00254 | 834 | SMART | EFG_C_a | 715 | 804 | IPR000640 | - | |
Bda06g00254 | 834 | TIGRFAM | small_GTP: small GTP-binding protein domain | 9 | 153 | IPR005225 | GO:0005525 | |
Bda06g00254 | 834 | Gene3D | - | 560 | 713 | IPR014721 | - | |
Bda06g00254 | 834 | PANTHER | - | 1 | 833 | - | - | |
Bda06g00254 | 834 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 1 | 833 | - | - | |
Bda06g00254 | 834 | SUPERFAMILY | EF-G C-terminal domain-like | 475 | 551 | IPR035647 | - | |
Bda06g00254 | 834 | Pfam | Elongation factor Tu GTP binding domain | 6 | 331 | IPR000795 | GO:0003924|GO:0005525 | |
Bda06g00254 | 834 | CDD | aeEF2_snRNP_like_IV | 550 | 722 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda06g00254 | Bda-Chr6:4429824 | Bda15g00849 | Bda-Chr15:13249945 | 0 | dispersed | |
Bda06g00254 | Bda-Chr6:4429824 | Bda04g01109 | Bda-Chr4:61986941 | 1.04E-25 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda06g00254 | K03234 | - | sind:105166103 | 1506.12 |