Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00261 ATGGGAAGAGGAAAGATTGAGATTAAGCGAATCGAAAACACGACGAATCGACAAGTTACCTTCTGTAAGAGGCGCAATGGGTTGCTGAAGAAAGCCTATGAACTGTCTGTTTTGTGTGATGCAGAAGTCGCCCTCATCGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCAAATAACAGTGTGAGAGGGACTATAGAAAGGTACAAGAAGGCCTGTTCCGACTCTTCCAACACAGCCACTGTTGCTGAAACAAATACTCAGTTCTACCAGCACGAAGCAACCAAATTGAGAAGACAAATCCGAGATATCCAGGCTTCAAACAGGAATATAACTGGAGAAGCCCTCAGCTCATTGTCCTTTAAGGATCTAAAGAACCTGGAGGGAAGATTGGAGAAAGGAATCAGTAGAATCAGAGCCAAAAAAGTGAGAATGATGCCTGTTTCTCTTATTTGA 456 44.08 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKACSDSSNTATVAETNTQFYQHEATKLRRQIRDIQASNRNITGEALSSLSFKDLKNLEGRLEKGISRIRAKKVRMMPVSLI 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4487067 4489510 - Bda023488.1 Bda06g00261 7843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00261 151 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 2 145 - -
Bda06g00261 151 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda06g00261 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda06g00261 151 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda06g00261 151 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda06g00261 151 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda06g00261 151 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bda06g00261 151 Pfam K-box region 84 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda06g00261 151 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Bda06g00261 151 ProSiteProfiles K-box domain profile. 87 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda06g00261 151 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda06g00261 151 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bda06g00261 151 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda06g00261 151 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00052 Bda-Chr2:2267811 Bda06g00261 Bda-Chr6:4487067 4.84E-76 dispersed
Bda02g00061 Bda-Chr2:2477362 Bda06g00261 Bda-Chr6:4487067 4.23E-71 dispersed
Bda06g00261 Bda-Chr6:4487067 Bda08g00226 Bda-Chr8:2229689 5.42E-48 dispersed
Bda01g00834 Bda-Chr1:39609393 Bda06g00261 Bda-Chr6:4487067 8.51E-15 transposed
Bda13g00714 Bda-Chr13:8487005 Bda06g00261 Bda-Chr6:4487067 2.32E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15988 PF01486 K-box 3.80E-19 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00261 K09264 - mnt:21385593 246.514