Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00313 ATGCCGCTCCCCTCCAGACATGGTTTTTGTTTCGAGCTATTTGGGTTTTGGTTTTGTTTAGGGGTGGTGATGCTTAAATGTTCTGTTGCTTCAGCTCAGCTCCGACAAGCCGTCTCCGATCCGCATTGGCAATCTGCGACTGCCACCTGGTACGGCAGCCCTGACGGCGATGGCAGCGACGGTGGAGCTTGTGGGTATGGAAATTTGGTGGACGTTAAGCCATTAAAGGCTAGAGTGGGAGCAGTAAGCCCTGTGTTGTTTAAAAATGGCGTAGGGTGTGGTGCATGCTACAAGGTCAGGTGCTTAGATAGAAGCATTTGCGCGAGACGAGCTGTTACTATAATTGTCACCGACGAGTGCCCCGGCGGCTACTGCGCCAATGGAAATACCCACTTCGATCTCAGCGGCGCAGCATTTGGCCGTTTGGCCGTCGCAGGTGAAGATGGTCAGCTCAGGAACCGAGGCGAAATCTCTGTGATCTATCGACGGACTCCATGTAAATATCCTGGAAAGAACATCGCCTTTCATGTTAATGAAGGTTCAACTGAATATTGGCTTTCACTCTTGGTGGAGTTCGAGGATGGAGATGGAGATATTGGATCAATGCAAATAAAAGAAGCAGATTCACGGGAGTGGCTGGCAATGAAACATATTTGGGGAGCCGCGTGGTGCGTTGTCGGGGGGCCATTTAGAGGTCCTTTTTCAGTGAAGTTAACAACGTTATTAACAGGAAGAACTCTGTCTGCCAGAGATGTAATTCCAAAGAACTGGGCTCCTAAAGCCACTTATTCCTCCCGCCTTAATTTCTCTTAG 813 49.57 MPLPSRHGFCFELFGFWFCLGVVMLKCSVASAQLRQAVSDPHWQSATATWYGSPDGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFKNGVGCGACYKVRCLDRSICARRAVTIIVTDECPGGYCANGNTHFDLSGAAFGRLAVAGEDGQLRNRGEISVIYRRTPCKYPGKNIAFHVNEGSTEYWLSLLVEFEDGDGDIGSMQIKEADSREWLAMKHIWGAAWCVVGGPFRGPFSVKLTTLLTGRTLSARDVIPKNWAPKATYSSRLNFS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5196199 5197569 + Bda023555.1 Bda06g00313 7895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00313 270 SUPERFAMILY Barwin-like endoglucanases 36 170 IPR036908 -
Bda06g00313 270 Gene3D - 26 166 IPR036908 -
Bda06g00313 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 171 IPR007112 -
Bda06g00313 270 SUPERFAMILY PHL pollen allergen 171 265 IPR036749 -
Bda06g00313 270 Pfam Expansin C-terminal domain 173 254 IPR007117 -
Bda06g00313 270 PANTHER EXPANSIN-B3-LIKE 22 269 - -
Bda06g00313 270 Gene3D - 167 266 IPR036749 -
Bda06g00313 270 Pfam Lytic transglycolase 81 159 IPR009009 -
Bda06g00313 270 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Bda06g00313 270 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Bda06g00313 270 PRINTS Major pollen allergen Lol pI signature 241 258 IPR005795 GO:0005576|GO:0019953
Bda06g00313 270 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Bda06g00313 270 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Bda06g00313 270 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Bda06g00313 270 SMART dpbb_1 79 161 IPR007112 -
Bda06g00313 270 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Bda06g00313 270 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Bda06g00313 270 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Bda06g00313 270 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Bda06g00313 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Bda06g00313 270 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Bda06g00313 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 265 IPR007117 -
Bda06g00313 270 PANTHER EXPANSIN-B3 22 269 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00313 Bda15g00905 CCT
Bda06g00313 Bda14g00750 CCT
Bda06g00313 Bda13g00660 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00313 Bda-Chr6:5196199 Bda15g00905 Bda-Chr15:14858691 1.10E-147 dispersed
Bda13g00660 Bda-Chr13:7549017 Bda06g00313 Bda-Chr6:5196199 2.05E-164 wgd
Bda14g00750 Bda-Chr14:5727761 Bda06g00313 Bda-Chr6:5196199 6.42E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00313 K20628 - cit:102618203 432.95