Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda06g00320 | ATGGGGGGTTGTATATCCACGAGTAGCCATAGTAGTTGCAGTAGCACAAGCAATGGGGAAGCAGTTTCTTCTTCCTGCCTAGGTTTAGTGGTTTATGATCAGCAGAGAAGCAAGAGAACGTTTTCTGATCGAATTGTTTCCCCTCATCGTTCAGCCTCGATGTCGAGCCGGATTGTCACTAATGGAAAGACTTCGACTGCTTGCATTTTCACCCAACAGGGTCGCAAGGGAATTAACCAGGATGCCATGATTGTGTGGGAAGAGTTCATGTCTGGAGATGTAACATTTTGTGGTGTTTTCGATGGTCATGGGCCACACGGCCATCTAGTAGCTCGGAAAGTTCGAGATGCTTTGCCGAAAAAGCTTCTATCGTTCTTGCTTTCTTCCCAAACGAAGCAGAACAGATCTGGTCAAAACTGTTTCAACAGGAAATCCAAGAATGGAGAAGATGGAGATGCAGAGAAGGATGCTTCAGCAGAAGATAAATCGGATTCTGCGTGGAGGGAAGCATTCCTCAGGTCATACAAAGCCATGGATAAGGAGCTAAGATCCCATCCAAATTTGGACTGTTTCTGCAGTGGCAGTACTGCCGTGACTATAATCAAACAGGGCTCGAATCTGTTCATGGGAAATATCGGGGATTCTAGAGCGATTCTTGGATCGCGGGGAAGTGACGATTCCATGGTGGCAATCCAATTGACTGTTGATCTGAAGCCTGATTTGCCCAGAGAAGCTGAAAGGATAAAACAATGCAAAGGTAGAGTCTTTGCATTGCAGGATGAGCCTGAAGTGCCAAGAGTATGGCTGCCATTTGATGATGCACCCGGGCTAGCCATGGCTCGAGCTTTCGGCGATTTCTGTTTGAAGGAATATGGTGTGATCTCTATACCAGAATTCTCCCATCGAATACTCACAAACAAAGATCAGTTCATCGTTCTCGCCTCAGATGGGGTATGGGATGTGTTGAGTAATGAGGAGGTGGTGGGGATTGTGTCTACAGCTCCTACGAGGTCGTCGGCTGCGAGAGTCCTGGTCGACAAAGCTGCGCAAGAATGGAAGCTCAAATACCCAACTTCGAAGATGGACGATTGCGCAGTCGTTTGCCTATTTCTGGACGGAAAAATGGATTCTGACTCGGATTACGATGAACAAGGTTCTTCATCTGTCATTCTTCAAAGAGATCATTCTGGCAACAGTATGATCGAATCAGATGGTACCCAGAAGAGTGAGCCAACTTTGCGGCGAAACGACACTGTCCGATCATCGGGAGACGACGAAACTTCTGAGAAATTGGCCGTGGAAGCGGAAGAAAGAGTTGCAGCTGAAGATCAGAACTGGTCAGGTTTGGAAGGGGTGACCAGAGTGAACTCACTAGTCCAGCTACCTAGATTTTCTCAAGAAAAACTAAAGCCTTGA | 1416 | 46.96 | MGGCISTSSHSSCSSTSNGEAVSSSCLGLVVYDQQRSKRTFSDRIVSPHRSASMSSRIVTNGKTSTACIFTQQGRKGINQDAMIVWEEFMSGDVTFCGVFDGHGPHGHLVARKVRDALPKKLLSFLLSSQTKQNRSGQNCFNRKSKNGEDGDAEKDASAEDKSDSAWREAFLRSYKAMDKELRSHPNLDCFCSGSTAVTIIKQGSNLFMGNIGDSRAILGSRGSDDSMVAIQLTVDLKPDLPREAERIKQCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRILTNKDQFIVLASDGVWDVLSNEEVVGIVSTAPTRSSAARVLVDKAAQEWKLKYPTSKMDDCAVVCLFLDGKMDSDSDYDEQGSSSVILQRDHSGNSMIESDGTQKSEPTLRRNDTVRSSGDDETSEKLAVEAEERVAAEDQNWSGLEGVTRVNSLVQLPRFSQEKLKP | 471 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5253823 | 5255568 | + | Bda023561.1 | Bda06g00320 | 7902 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda06g00320 | 471 | MobiDBLite | consensus disorder prediction | 134 | 161 | - | - | |
| Bda06g00320 | 471 | MobiDBLite | consensus disorder prediction | 378 | 444 | - | - | |
| Bda06g00320 | 471 | MobiDBLite | consensus disorder prediction | 408 | 443 | - | - | |
| Bda06g00320 | 471 | ProSiteProfiles | PPM-type phosphatase domain profile. | 66 | 371 | IPR001932 | - | |
| Bda06g00320 | 471 | Pfam | Protein phosphatase 2C | 152 | 349 | IPR001932 | - | |
| Bda06g00320 | 471 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 1 | 459 | - | - | |
| Bda06g00320 | 471 | CDD | PP2Cc | 67 | 371 | IPR001932 | - | |
| Bda06g00320 | 471 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Bda06g00320 | 471 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 459 | - | - | |
| Bda06g00320 | 471 | Gene3D | - | 50 | 373 | IPR036457 | - | |
| Bda06g00320 | 471 | SUPERFAMILY | PP2C-like | 63 | 373 | IPR036457 | - | |
| Bda06g00320 | 471 | MobiDBLite | consensus disorder prediction | 145 | 161 | - | - | |
| Bda06g00320 | 471 | MobiDBLite | consensus disorder prediction | 382 | 407 | - | - | |
| Bda06g00320 | 471 | SMART | PP2C_4 | 55 | 369 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00611 | Bda-Chr1:33108477 | Bda06g00320 | Bda-Chr6:5253823 | 4.42E-84 | dispersed | |
| Bda01g01090 | Bda-Chr1:45656495 | Bda06g00320 | Bda-Chr6:5253823 | 7.32E-133 | dispersed | |
| Bda06g00320 | Bda-Chr6:5253823 | Bda12g00309 | Bda-Chr12:3395056 | 1.97E-149 | dispersed | |
| Bda13g01610 | Bda-Chr13:39617835 | Bda06g00320 | Bda-Chr6:5253823 | 1.58E-83 | dispersed | |
| Bda15g00908 | Bda-Chr15:15019722 | Bda06g00320 | Bda-Chr6:5253823 | 2.70E-169 | transposed | |
| Bda13g00655 | Bda-Chr13:7507597 | Bda06g00320 | Bda-Chr6:5253823 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda06g00320 | - | - | rcu:8262108 | 715.301 |