Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00321 ATGGGGTGGAGGAAATCTGCTACTGTGCACAAGAATTTGAAGATCTATGCGCAGGTTCTGGGCTTCGTGTTGATCTGTGTGCCGCAGTTTTCTTGTGGATTAACTAATCCCAATGACTTTGCTGCAATTAGTGATTTACATGCCGCACTTGGCTACCCTATTCTTCCTGGTTGGGGCACTGGACAAGATCCCTGTGGTGATGCCTGGCAGGGTGTCGTGTGCAACGTTTCTGATATAGTAAAAATAGTTCTTAATGCGGCTAATCTGGGAGGAGGATTGGGTGACAATTTGAAAATGTTTACTTCTATAAATACGATAGATCTGAGTAATAATCGCATTGGAGGGAGCATACCATCCAACTTACCCGTGACGATGCAAAACTTTTTTCTTTCAGCTAATCGGTTTACTGGAAGCATTCCAAGTTCATTATCCACTTTGACTCAATTGACTGCTTTATCGTTGAATGAAAATTACCTGAGCGGGGAAATTCCCGATTCATTCGCAACCCTTTCTGGACTGGTTAACTTAGACTTGTCCAATAACAATTTGAGTGGGCCTCTACCTCTCTCTATGGAAAACTTGTTGGCTCTGACTACCCTGCGATTGCAGAACAATCAGCTTTCTGGTACACTTGATGTTCTACAAGATCTTCCACTCAAAGACTTGAATATAGAGAATAATCTGTTTTCTGGTCCAATACCTGCGAAGCTTATGAGCATACCGAATTTCAGCAGATATGATGGAAATCCATTCAATTCTTCTGTTTCTCCAGTACTGTCACCTTCACCTCCATCAAAACAATCACCGGTACCATTCTTTCCTCGAGAACCATCTCCGGAAAAGGCACCGCCGGAACTGGCTGACGGACCATCTTCATCAAATGAATCAAAATCAGGGAATAAAAAAAGGATAGTTTGGATATCAATTGCTGCGGCGTTATCGTTTATAATCTTGTCATTAGCGCTTATATTATTTATGCCAAGGTGTCTCAGAGGAAGTAGAGAGGATGACAGAAATTTTAAACAGCATCAAATTGTTCCAAAAGATGCTGTTGCAAAGCCAAAGGAGAGTCGTCAAGCAGAGACTCGAAGAATAGAAGCGATACCAGAACCAACAGCACTAAAGCAGGATTATCATGAGATAGATATTAGTGCTCTGGATGACTATTTAATTCCTCCACCTCCTCCTCTGCCTCCTCCTCTGCCTCCCCCTCCACCTCCACCTCCCCCTCCCCCTCCACCACCTTTTGCAGCGAAGATCAATAAGGAGACAATTATTCCAACCGAACTGCTTGCGGTGAAAAAACTGGATAAAAGGACTTGCAGTCAACAAAAGGATGATGACTTTCTTGAAATGGTTAATAATATTGATACAATACGCCATTATAATATTGTGGAGCTCATGGGTTACTGTGCGGAACATGATGAAAGGCTGCTTATCTATGAGTACTGTAATAATGGTACTCTGCAAGATGCACTACACTCCGAGGATGAAACCAAAAATAAACTTTCTTGGAATATCCGGTTGCAAATGGCTCTTGGAGCTGCTAGAGCCTTAGAGTATCTGCACGAGGTCTGTCAGCCTCCTGTCATGCATAGAAATTTCAAGTCTGCCAATATTCTTCTCGATGATGATTATTCTGTCCGTGTCTCCGATTGTGGTTTATCTCCTCTTATATCATCTGGCACTGTTAGTCAGTTGTCTGGTCATCTTCAATCTGTGTATGGATGGGGAGCCCCAGAGTATGAATCTGGAATTTACACTTTGAAGAGTGATGTTTACAGTTTTGGTGTGGTTATGCTAGAACTTTTGACAGGCCGGATGCCGTATGACAGGACGAGGATTAGAGGAGAACAATTTCTGGTGAGATGGGCGATTCCACAACTTCATGACATTGATGCATTGTCAAGAATGGTCGATCCATCTCTCGGTCTCGAATACCCAGCCAAATCCTTATCACACTTTGCGGACATCATATCCCGATGTGTTCAGTCTGAGCCTGAATTCAGGCCAGCAATGTCTGAAGTTGTTCAGGATTTGCTGGACATGATAAGAAGAGAGCCTCATGGGAGTGGATCAGCAGAAGATTAA 2091 43.04 MGWRKSATVHKNLKIYAQVLGFVLICVPQFSCGLTNPNDFAAISDLHAALGYPILPGWGTGQDPCGDAWQGVVCNVSDIVKIVLNAANLGGGLGDNLKMFTSINTIDLSNNRIGGSIPSNLPVTMQNFFLSANRFTGSIPSSLSTLTQLTALSLNENYLSGEIPDSFATLSGLVNLDLSNNNLSGPLPLSMENLLALTTLRLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPAKLMSIPNFSRYDGNPFNSSVSPVLSPSPPSKQSPVPFFPREPSPEKAPPELADGPSSSNESKSGNKKRIVWISIAAALSFIILSLALILFMPRCLRGSREDDRNFKQHQIVPKDAVAKPKESRQAETRRIEAIPEPTALKQDYHEIDISALDDYLIPPPPPLPPPLPPPPPPPPPPPPPPFAAKINKETIIPTELLAVKKLDKRTCSQQKDDDFLEMVNNIDTIRHYNIVELMGYCAEHDERLLIYEYCNNGTLQDALHSEDETKNKLSWNIRLQMALGAARALEYLHEVCQPPVMHRNFKSANILLDDDYSVRVSDCGLSPLISSGTVSQLSGHLQSVYGWGAPEYESGIYTLKSDVYSFGVVMLELLTGRMPYDRTRIRGEQFLVRWAIPQLHDIDALSRMVDPSLGLEYPAKSLSHFADIISRCVQSEPEFRPAMSEVVQDLLDMIRREPHGSGSAED 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5260118 5265465 + Bda023562.2 Bda06g00321 7903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00321 696 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 24 371 - -
Bda06g00321 696 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 428 695 - -
Bda06g00321 696 Gene3D Transferase(Phosphotransferase) domain 1 484 688 - -
Bda06g00321 696 Pfam Protein tyrosine and serine/threonine kinase 430 680 IPR001245 GO:0004672|GO:0006468
Bda06g00321 696 SUPERFAMILY Protein kinase-like (PK-like) 428 680 IPR011009 -
Bda06g00321 696 Gene3D Phosphorylase Kinase; domain 1 417 483 - -
Bda06g00321 696 MobiDBLite consensus disorder prediction 262 284 - -
Bda06g00321 696 PANTHER OS01G0253100 PROTEIN 428 695 IPR045271 GO:0004714|GO:0006468
Bda06g00321 696 PANTHER OS01G0253100 PROTEIN 24 371 IPR045271 GO:0004714|GO:0006468
Bda06g00321 696 Gene3D Ribonuclease Inhibitor 36 261 IPR032675 -
Bda06g00321 696 ProSiteProfiles Protein kinase domain profile. 340 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00321 696 MobiDBLite consensus disorder prediction 392 417 - -
Bda06g00321 696 Pfam Leucine rich repeat 126 183 IPR001611 GO:0005515
Bda06g00321 696 SUPERFAMILY L domain-like 53 242 - -
Bda06g00321 696 MobiDBLite consensus disorder prediction 254 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00321 - - - gmx:100814012 752.281
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00321 Bda-Chr6:5260118 Bda09g01596 Bda-Chr9:47377168 5.92E-38 dispersed
Bda07g01009 Bda-Chr7:11865319 Bda06g00321 Bda-Chr6:5260118 0 transposed
Bda13g00653 Bda-Chr13:7491609 Bda06g00321 Bda-Chr6:5260118 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda09g01596 . 407 700 Strubbelig Receptor Gene Family AT1G11130 54.2 5.0e-86 315.8
Bda02g00925 . 353 647 Strubbelig Receptor Gene Family AT1G11130 51.2 1.9e-80 297.4
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda09g01596 . 50 723 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-144 510.8
Bda09g01596 . 226 730 Strubbelig Receptor Gene Family AT4G22130 69.7 2.1e-175 612.5
Bda02g00925 . 136 677 Strubbelig Receptor Gene Family AT4G22130 59.6 1.6e-162 569.7
Bda13g00653 . 255 560 Strubbelig Receptor Gene Family AT4G22130 58.0 7.2e-99 358.2
Bda07g01009 . 431 707 Strubbelig Receptor Gene Family AT4G22130 59.0 4.0e-89 325.9
Bda06g00321 . 429 686 Strubbelig Receptor Gene Family AT4G22130 59.8 1.8e-86 317.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69664 PF07714 PK_Tyr_Ser-Thr 2.20E-43 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00321 Bda_Chr06 FPKM 20.001808 19.622776 18.763006 16.643023 21.476587 20.258312 22.661657 16.319777 14.852355