Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00358 ATGAACGATTTGCTCACGGACTCTTTTGTCAGTGATGGCAAAGGCGGGACCTGGGGAGCTACTGATATCGAGATGGGCAGGAGAGAATCGCAGAGAAACGGAGATATGGGAATGGAAGCTTTCAATAAGCAGATACAAGAGATTGAGAAACAAGTGGATAGACTCTCTGGATTCCTTGTTAAACTTAAGGAAGCTAATGAGGAATCAAAATCTGTCACGAAAGCGACTGCCATGAAAGCCATCAAGAAGCGGATGGAGAAAGATATCGATGAAGTGGGAAAGATTGCACGTAGTGTGAAAACAAAGCTGGAAGCAATGAACAAAGAAAATTTAGCCAATAGAGAAAAGCCCGGATGTGGAAAGGGCACAGCTGTTGATCGGGCCAGAATGAATGTGACAAATGCTTTGACAAAGAAGTTTAAGGAGATAATGATTGAGTTTCAGACTCTCCGACAAAGAATTCAAGATGAATATCGTGAAGTTGTGGAAAGAAGAGTCATTACAGTAACCGGAACTAGACCAGATGAACAGACTATTGACCACCTCATCGAAACCGGAAATAGCGAGCAAATCTTCCAGAAGGCGATTCAAGAATCAGGACGAGGACAGGTTATCAATACATTGGAAGAAATTCAAGAGAGGCATGATGCTGTAAGAGAAATTGAGGAAAAGCTTCTCGACTTACACCAGATTTATCTCGATATGGCAGTCTTAGTGGAGGCTCAAGGCGAAATTCTCGACAACATAGAAAACCAGGTTACGAATGCGGTTGATCACGTCCAATCAGGGACGACTATGCTCCAAAATGCGAAGAAACTTCAGAGGAATTCTCGAAAGTGGATGTGCATTGCAATTCTTATTCTCTTGATAATAGTTGTCATAATAGTCGTCGGAGTCATCCAACCTTGGAAGAACAAGGGAGCGTAA 927 42.61 MNDLLTDSFVSDGKGGTWGATDIEMGRRESQRNGDMGMEAFNKQIQEIEKQVDRLSGFLVKLKEANEESKSVTKATAMKAIKKRMEKDIDEVGKIARSVKTKLEAMNKENLANREKPGCGKGTAVDRARMNVTNALTKKFKEIMIEFQTLRQRIQDEYREVVERRVITVTGTRPDEQTIDHLIETGNSEQIFQKAIQESGRGQVINTLEEIQERHDAVREIEEKLLDLHQIYLDMAVLVEAQGEILDNIENQVTNAVDHVQSGTTMLQNAKKLQRNSRKWMCIAILILLIIVVIIVVGVIQPWKNKGA 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5725017 5727489 - Bda023605.1 Bda06g00358 7940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00358 308 Coils Coil 45 65 - -
Bda06g00358 308 CDD SynN 38 195 IPR006011 GO:0016020
Bda06g00358 308 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Bda06g00358 308 Gene3D - 33 162 - -
Bda06g00358 308 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 4 299 - -
Bda06g00358 308 SMART tSNARE_6 203 270 IPR000727 -
Bda06g00358 308 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Bda06g00358 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Bda06g00358 308 PANTHER SYNTAXIN 4 299 IPR045242 -
Bda06g00358 308 Pfam SNARE domain 244 296 IPR000727 -
Bda06g00358 308 CDD SNARE_syntaxin1-like 207 268 - -
Bda06g00358 308 SMART SynN_4 33 159 IPR006011 GO:0016020
Bda06g00358 308 Gene3D - 201 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00358 K08486 STX1B_2_3; syntaxin 1B/2/3 - mnt:21401230 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00358 Bda-Chr6:5725017 Bda06g00929 Bda-Chr6:25095255 1.85E-55 dispersed
Bda06g00358 Bda-Chr6:5725017 Bda09g01276 Bda-Chr9:44512231 1.61E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g523 . Blo15g00503 Bda06g00358 . . . . . . . . Cma20g00629 Car02g00135 Car20g00525 . . . . . . . . . . . . . . . . . Cone3ag1346 . . . . . . . . . . . . Bpe07g00604 . . . Cmo02g00163 Cmo20g00615 . . . . Cpe16g00449 Cpe05g01447 Bhi10g01451 . . . . . . Cla02g00831 Cam02g0975 Cec02g0887 Cco02g0923 Clacu02g0875 Cmu02g0866 Cre02g1184 . . . Cme11g00777
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01286 . 440 803 SNARE and Associated Proteins AT3G24350 59.5 1.5e-97 353.2
Bda01g00978 . 1 341 SNARE and Associated Proteins AT3G24350 61.5 9.0e-95 344.0
Bda11g01860 . 1 294 SNARE and Associated Proteins AT2G18260 55.0 5.7e-82 301.2
Bda14g01003 . 1 290 SNARE and Associated Proteins AT2G18260 55.0 1.4e-80 296.6
Bda06g00929 . 1 293 SNARE and Associated Proteins AT2G18260 51.8 1.6e-76 283.1
Bda05g01127 . 22 278 SNARE and Associated Proteins AT3G11820 78.6 1.9e-109 392.5
Bda03g00658 . 19 279 SNARE and Associated Proteins AT3G11820 74.3 2.6e-106 382.1
Bda01g00422 . 19 279 SNARE and Associated Proteins AT3G11820 71.6 1.9e-101 365.9
Bda01g00430 . 19 279 SNARE and Associated Proteins AT3G11820 71.6 1.9e-101 365.9
Bda09g01276 . 31 281 SNARE and Associated Proteins AT3G11820 66.1 5.7e-93 337.8
Bda03g00659 . 19 238 SNARE and Associated Proteins AT3G11820 57.1 5.3e-67 251.5
Bda02g00552 . 31 159 SNARE and Associated Proteins AT3G11820 56.6 6.8e-38 154.8
Bda03g00658 . 1 279 SNARE and Associated Proteins AT3G52400 62.5 5.4e-89 324.7
Bda01g00422 . 1 279 SNARE and Associated Proteins AT3G52400 61.2 8.6e-87 317.4
Bda01g00430 . 1 279 SNARE and Associated Proteins AT3G52400 61.2 8.6e-87 317.4
Bda05g01127 . 29 278 SNARE and Associated Proteins AT3G52400 66.4 2.1e-85 312.8
Bda09g01276 . 1 281 SNARE and Associated Proteins AT3G52400 56.0 2.0e-80 296.2
Bda09g01276 . 1 299 SNARE and Associated Proteins AT4G03330 67.9 3.0e-107 385.2
Bda03g00658 . 1 279 SNARE and Associated Proteins AT4G03330 56.1 1.3e-78 290.0
Bda05g01127 . 1 282 SNARE and Associated Proteins AT4G03330 53.4 2.9e-78 288.9
Bda01g00422 . 1 284 SNARE and Associated Proteins AT4G03330 52.4 3.6e-76 282.0
Bda01g00430 . 1 284 SNARE and Associated Proteins AT4G03330 52.4 3.6e-76 282.0
Bda02g00552 . 1 159 SNARE and Associated Proteins AT4G03330 63.6 3.7e-49 192.2
Bda03g00659 . 1 201 SNARE and Associated Proteins AT4G03330 52.6 1.4e-48 190.3
Bda09g01276 . 1 303 SNARE and Associated Proteins AT1G61290 77.2 1.5e-122 436.0
Bda03g00658 . 1 279 SNARE and Associated Proteins AT1G61290 59.1 3.5e-84 308.5
Bda05g01127 . 1 277 SNARE and Associated Proteins AT1G61290 58.6 2.3e-83 305.8
Bda01g00422 . 1 294 SNARE and Associated Proteins AT1G61290 54.7 4.8e-81 298.1
Bda01g00430 . 1 294 SNARE and Associated Proteins AT1G61290 54.7 4.8e-81 298.1
Bda02g00552 . 1 159 SNARE and Associated Proteins AT1G61290 74.2 2.7e-60 229.2
Bda09g01276 . 1 303 SNARE and Associated Proteins AT1G11250 75.6 4.3e-119 424.5
Bda03g00658 . 1 279 SNARE and Associated Proteins AT1G11250 60.9 3.0e-88 322.0
Bda05g01127 . 1 278 SNARE and Associated Proteins AT1G11250 59.4 1.2e-87 320.1
Bda01g00422 . 1 284 SNARE and Associated Proteins AT1G11250 57.7 3.5e-84 308.5
Bda01g00430 . 1 284 SNARE and Associated Proteins AT1G11250 57.7 3.5e-84 308.5
Bda02g00552 . 1 159 SNARE and Associated Proteins AT1G11250 70.4 1.2e-55 213.8
Bda06g00358 . 1 307 SNARE and Associated Proteins AT3G03800 63.2 3.4e-95 345.1
Bda06g00358 . 1 204 SNARE and Associated Proteins AT5G08080 62.3 7.1e-58 220.7
Bda06g01261 BCT 1 263 SNARE and Associated Proteins AT5G16830 63.2 5.9e-78 287.7
Bda06g01264 . 1 263 SNARE and Associated Proteins AT5G16830 63.2 2.3e-77 285.8
Bda08g00639 BCT 1 263 SNARE and Associated Proteins AT5G16830 62.5 9.5e-76 280.4
Bda08g00639 BCT 1 274 SNARE and Associated Proteins AT5G46860 70.4 5.3e-84 307.8
Bda06g01264 . 1 263 SNARE and Associated Proteins AT5G46860 70.0 5.9e-83 304.3
Bda06g01261 BCT 1 263 SNARE and Associated Proteins AT5G46860 69.6 6.5e-82 300.8
Bda08g00639 BCT 1 257 SNARE and Associated Proteins AT4G17730 66.5 1.1e-76 283.5
Bda06g01264 . 1 257 SNARE and Associated Proteins AT4G17730 64.2 5.8e-75 277.7
Bda06g01261 BCT 1 257 SNARE and Associated Proteins AT4G17730 64.2 2.2e-74 275.8
Bda01g01045 . 1 184 SNARE and Associated Proteins AT4G17730 54.0 1.2e-43 173.7
Bda13g01915 . 1 176 SNARE and Associated Proteins AT4G17730 53.1 4.2e-41 165.2
Bda08g00639 BCT 65 256 SNARE and Associated Proteins AT1G32270 58.3 3.2e-49 192.6
Bda06g01261 BCT 65 256 SNARE and Associated Proteins AT1G32270 58.3 4.2e-49 192.2
Bda06g01264 . 65 256 SNARE and Associated Proteins AT1G32270 58.3 4.2e-49 192.2
Bda14g00262 . 1 337 SNARE and Associated Proteins AT5G05760 65.5 2.0e-112 402.5
Bda13g01286 . 440 803 SNARE and Associated Proteins AT3G24350 59.5 1.5e-97 353.2
Bda01g00978 . 1 341 SNARE and Associated Proteins AT3G24350 61.5 9.0e-95 344.0
Bda01g01644 . 1 341 SNARE and Associated Proteins AT5G26980 75.4 2.6e-125 445.3
Bda01g01638 . 1 341 SNARE and Associated Proteins AT5G26980 75.4 2.6e-125 445.3
Bda08g01094 . 16 263 SNARE and Associated Proteins AT5G26980 78.6 7.3e-96 347.4
Bda01g01644 . 1 339 SNARE and Associated Proteins AT4G02195 63.9 2.6e-101 365.5
Bda01g01638 . 1 339 SNARE and Associated Proteins AT4G02195 63.9 2.6e-101 365.5
Bda08g01094 . 16 261 SNARE and Associated Proteins AT4G02195 67.6 6.4e-84 307.8
Bda01g01644 . 1 339 SNARE and Associated Proteins AT3G05710 75.2 4.8e-127 451.1
Bda01g01638 . 1 339 SNARE and Associated Proteins AT3G05710 75.2 4.8e-127 451.1
Bda08g01094 . 17 261 SNARE and Associated Proteins AT3G05710 82.0 4.5e-101 364.8
Bda09g00411 BCT,CCT 1 232 SNARE and Associated Proteins AT1G16240 72.4 6.2e-89 323.9
Bda05g00693 CCT 1 234 SNARE and Associated Proteins AT1G16240 60.3 9.7e-74 273.5
Bda07g00381 BCT,CCT 1 195 SNARE and Associated Proteins AT1G16240 70.8 5.9e-71 264.2
Bda09g00411 BCT,CCT 1 232 SNARE and Associated Proteins AT1G79590 70.4 2.8e-85 312.0
Bda05g00693 CCT 1 233 SNARE and Associated Proteins AT1G79590 61.4 1.9e-73 272.7
Bda07g00381 BCT,CCT 1 195 SNARE and Associated Proteins AT1G79590 69.7 1.3e-71 266.5
Bda09g00403 . 63 264 SNARE and Associated Proteins AT1G28490 67.3 7.6e-67 250.4
Bda07g00367 . 55 226 SNARE and Associated Proteins AT1G28490 60.6 2.8e-53 205.3
Bda02g00767 . 1 286 SNARE and Associated Proteins AT3G09740 56.4 1.6e-80 296.2
Bda02g00767 . 1 286 SNARE and Associated Proteins AT3G45280 56.4 1.1e-78 290.0
Bda02g00767 . 1 286 SNARE and Associated Proteins AT3G61450 52.3 9.8e-75 276.9
Bda14g00163 . 65 263 SNARE and Associated Proteins AT1G51740 65.5 1.3e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001189 1 6 1 1 1 2 3 2 2 2 2 2 3 2 3 3 2 4 3 2 3 1 2 3 3 2 3 8 3 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00358 Bda_Chr06 FPKM 16.875767 17.345495 17.21172 16.621273 21.486414 19.528242 23.437038 12.793015 12.209527