Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00358 ATGAACGATTTGCTCACGGACTCTTTTGTCAGTGATGGCAAAGGCGGGACCTGGGGAGCTACTGATATCGAGATGGGCAGGAGAGAATCGCAGAGAAACGGAGATATGGGAATGGAAGCTTTCAATAAGCAGATACAAGAGATTGAGAAACAAGTGGATAGACTCTCTGGATTCCTTGTTAAACTTAAGGAAGCTAATGAGGAATCAAAATCTGTCACGAAAGCGACTGCCATGAAAGCCATCAAGAAGCGGATGGAGAAAGATATCGATGAAGTGGGAAAGATTGCACGTAGTGTGAAAACAAAGCTGGAAGCAATGAACAAAGAAAATTTAGCCAATAGAGAAAAGCCCGGATGTGGAAAGGGCACAGCTGTTGATCGGGCCAGAATGAATGTGACAAATGCTTTGACAAAGAAGTTTAAGGAGATAATGATTGAGTTTCAGACTCTCCGACAAAGAATTCAAGATGAATATCGTGAAGTTGTGGAAAGAAGAGTCATTACAGTAACCGGAACTAGACCAGATGAACAGACTATTGACCACCTCATCGAAACCGGAAATAGCGAGCAAATCTTCCAGAAGGCGATTCAAGAATCAGGACGAGGACAGGTTATCAATACATTGGAAGAAATTCAAGAGAGGCATGATGCTGTAAGAGAAATTGAGGAAAAGCTTCTCGACTTACACCAGATTTATCTCGATATGGCAGTCTTAGTGGAGGCTCAAGGCGAAATTCTCGACAACATAGAAAACCAGGTTACGAATGCGGTTGATCACGTCCAATCAGGGACGACTATGCTCCAAAATGCGAAGAAACTTCAGAGGAATTCTCGAAAGTGGATGTGCATTGCAATTCTTATTCTCTTGATAATAGTTGTCATAATAGTCGTCGGAGTCATCCAACCTTGGAAGAACAAGGGAGCGTAA 927 42.61 MNDLLTDSFVSDGKGGTWGATDIEMGRRESQRNGDMGMEAFNKQIQEIEKQVDRLSGFLVKLKEANEESKSVTKATAMKAIKKRMEKDIDEVGKIARSVKTKLEAMNKENLANREKPGCGKGTAVDRARMNVTNALTKKFKEIMIEFQTLRQRIQDEYREVVERRVITVTGTRPDEQTIDHLIETGNSEQIFQKAIQESGRGQVINTLEEIQERHDAVREIEEKLLDLHQIYLDMAVLVEAQGEILDNIENQVTNAVDHVQSGTTMLQNAKKLQRNSRKWMCIAILILLIIVVIIVVGVIQPWKNKGA 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5725017 5727489 - Bda023605.1 Bda06g00358 7940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00358 308 Coils Coil 45 65 - -
Bda06g00358 308 CDD SynN 38 195 IPR006011 GO:0016020
Bda06g00358 308 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Bda06g00358 308 Gene3D - 33 162 - -
Bda06g00358 308 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 4 299 - -
Bda06g00358 308 SMART tSNARE_6 203 270 IPR000727 -
Bda06g00358 308 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Bda06g00358 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Bda06g00358 308 PANTHER SYNTAXIN 4 299 IPR045242 -
Bda06g00358 308 Pfam SNARE domain 244 296 IPR000727 -
Bda06g00358 308 CDD SNARE_syntaxin1-like 207 268 - -
Bda06g00358 308 SMART SynN_4 33 159 IPR006011 GO:0016020
Bda06g00358 308 Gene3D - 201 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00358 Bda-Chr6:5725017 Bda06g00929 Bda-Chr6:25095255 1.85E-55 dispersed
Bda06g00358 Bda-Chr6:5725017 Bda09g01276 Bda-Chr9:44512231 1.61E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00358 K08486 - mnt:21401230 481.485