Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00361 AGTTTCTTCAAGGAGTGTCCTCACCCAGATGACAAACAGAGAAAAGAACTCAGTAGACAATTAGGTTTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAACCAGCATGAGCGCCATGAGAACTCGCAGCTTCGAGCAGAGAACGAAAAGCTTAGAGCAGATAACATGAGGTACAGAGAGGCTCTTAGTAATGCATCATGTCCCAACTGTGGAGGCCCTACGGCTATTGGAGAGATGTCTTTTGACGAACACCATTTGAGACTTGAAAATGCTCGTCTGCGAGAAGAGATTGATCGCATTTCAGCTATTGCTGCAAAATACGTCGGAAAGCCAATTTTGAACTACCCTCTTTTGTCTTCTCCAGTTCCATCTCGTCCACTCGACCTCGGCATGGGAAACTTCGGCCCACCGGGTATTGGAAGTGACATGTTCGGAAGTGCCAGTGATCTTCTACGATCAATCAGCGCTCCGACAGAGGCTGATAAACCAATGATAATTGAGCTTGCCGTTGCAAATCAATGGTCTACTGTATTTTCTGGAATTATCTCACGAGCAATGACCCTGGAAGTGCTTTCAACTGGAGTTGCAGGAAATTATAATGGAGCTTTACAAGTGATGACATCGGAGTTTCAAGTCCCTTCTCCCCTGGTGCCAACCAGAGAGAGTTATTTCGTAAGGTACTGTAAGCAGCACAGCGACGGAACATGGGCTGTGGTCGATGTTTCGTTGGATAATTTACGCCCAAGTCCGGCATTGAGATGTCGGCGGAGGCCGTCCGGCTGTTTGATCCAAGAAATGCCCAATGGATATTCTAAGGTCACTTGGGTAGAGCATGTGGAAGTGGATGATAGGGGTGTTCATAGTCTGTACAAGCAGCTGGTGTGCTCCGGCCATGCTTTTGGAGCGAAACGATGGATCGCCACCTTAGATCGTCAATGCGAACGCCTTGCAAGTGCTATGGCCACCGGAATTCCCACCGGAGATGTTGTAGTGATAACAAATCAAGAAGGGAGGAAGAGTATGTTGAAGTTAGCAGAGAGAATGGTCATAAGCTTCTGTGCTGGAGTGAGTGCTTCAACAACACATACATGGACTACACTATCAGGAACTGGAGCAGATGATGTTAGGGTGATGACCCGTAAAAGCATTGACGATCCCGGCAGACCTCCCGGCATCGTTCTAAGTGCCGCCACCTCCTTCTGGCTTCCGGTTTCTCCCAAGAGAGTGTTCGATTTCCTTCGCGACGAAAATTCTCGAAGTGAGTGGGACATTCTTTCCAACGGCGGAGTCGTTCAAGAAATGGCGCACATTGCCAATGGCCGCGACACTGGAAACTCCGTATCTTTGCTTCGGGTAAATAGTGCGAATTCGAGCCAGAGCAACATGCTCATTCTGCAAGAGAGTTGCACCGATCCAACCGGCTCTTTCGTGATTTATGCTCCGGTTGACATTGTAGCCATGAATGTGGTGTTGAATGGTGGAGACCCAGACTATGTTGCTCTTCTCCCTTCGGGATTTGCTATTCTTCCTGATGGAACTGCAACTCACAGTGTCGCCATTGGAGAAGCTTCTTCGGGTGGTTCTCTTTTAACCGTCGCATTTCAAATCTTGGTCGATTCCGTTCCGACTGCAAAACTATCTCTAGGGTCAGTCGCCACCGTCAACAATCTCATCGCCTGCACTGTTGAGAGGATCAAAGCTTCGTTGTCATGCGAAAATGCATGA 1746 48.0 SFFKECPHPDDKQRKELSRQLGLEPLQVKFWFQNKRTQMKNQHERHENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPILNYPLLSSPVPSRPLDLGMGNFGPPGIGSDMFGSASDLLRSISAPTEADKPMIIELAVANQWSTVFSGIISRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYKQLVCSGHAFGAKRWIATLDRQCERLASAMATGIPTGDVVVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVSPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSANSSQSNMLILQESCTDPTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTATHSVAIGEASSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENA 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5812678 5815947 + Bda023609.1 Bda06g00361 7943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00361 581 SMART START_1 104 322 IPR002913 GO:0008289
Bda06g00361 581 Pfam START domain 179 322 IPR002913 GO:0008289
Bda06g00361 581 Coils Coil 36 68 - -
Bda06g00361 581 Gene3D - 188 317 IPR023393 -
Bda06g00361 581 Gene3D - 1 59 - -
Bda06g00361 581 SMART HOX_1 1 46 IPR001356 GO:0003677
Bda06g00361 581 CDD homeodomain 1 43 IPR001356 GO:0003677
Bda06g00361 581 ProSiteProfiles 'Homeobox' domain profile. 1 42 IPR001356 GO:0003677
Bda06g00361 581 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Bda06g00361 581 SUPERFAMILY Bet v1-like 190 324 - -
Bda06g00361 581 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 179 578 - -
Bda06g00361 581 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 178 IPR042160 -
Bda06g00361 581 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 179 578 IPR042160 -
Bda06g00361 581 CDD START_ArGLABRA2_like 178 321 - -
Bda06g00361 581 ProSiteProfiles START domain profile. 180 325 IPR002913 GO:0008289
Bda06g00361 581 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 2 178 - -
Bda06g00361 581 Pfam Homeodomain 2 41 IPR001356 GO:0003677
Bda06g00361 581 SUPERFAMILY Bet v1-like 341 573 - -
Bda06g00361 581 ProSitePatterns 'Homeobox' domain signature. 17 40 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00361 Bda14g00713 CCT
Bda06g00361 Bda14g00713 ECH
Bda06g00361 Bda13g00620 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00361 Bda-Chr6:5812678 Bda14g00735 Bda-Chr14:5609503 1.53E-46 dispersed
Bda13g00620 Bda-Chr13:7230664 Bda06g00361 Bda-Chr6:5812678 0 wgd
Bda14g00713 Bda-Chr14:5378449 Bda06g00361 Bda-Chr6:5812678 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15997 PF01852 START 2.90E-44 CL0209 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00361 K09338 - aof:109845289 913.294