Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda06g00392 | ATGGAGGATGATTTGGAGGGGGAGAAGATAAAGCAGCCGGAGTTAGAGAACAAGACCAAACGGAAGATGAAGACTGCTTCGCAATTGGAGATTCTGGAGAAAACTTATGCGGTGGAAACCTATCCGTCGGAGTCTGTAAGAGCTGAGTTATCGGTAAAACTTGGGCTTTCCGATCGCCAATTACAGATGTGGTTCTGTCACAGGCGGTTAAAGGACAGGAAGACGCCATCAGCAAAGCGGCTGAAGAAGGATTCTCCGCCCCCAAATGCTGCAACTTCTGTGGGAGGGAATGGGGATGAATTGGAAGTGCGTAATGTTGAGAATGACCATGGTTCAGGCTCTGGTTCCGCTTTGGCTTCAAGTCCATATGGCCATGGAACGGATTTGAGGCGAGGTGTTCAGAGGCCTGGAGTGGCTATCGCCAGAATTAGTAGTGATATGCCGCCAATGAAGCGGTACTATGAAAGTCAGCAGACCATTGCTGAGCTTCGGGCTATAGCTTTTGTAGAAGCGCAGTTAGGAGAGCCGTTGAGGGAAGATGGACCAATTTTAGGAATGGAGTTTGATCAACTGCCTCCTGATGCATTTGGTGCTCCCATAGGGAGGGCATTGCATGAATATCAGTTTCTTCCAGAGCAGCCAACTATCAGAGCTGATACATATGAAAGAGCTACTACTTCCCATTACAGTTCGCCTGCTAGTGTCCAAAATGCCAGGGTCCCATTAGTCTCTACAGGGTTTTTGCATCGGAATGAACAGTCGGCTTCTGGATACCCTTTTCAAGGTCAGATGTCTAACTCAAATATCCTCACTCAGCAAGGCAGTCAGGGGCATTTCTTACCTTCTGCTGTGGCAATTTATGACAATGTTTACCGCAAGAACTCTATTGTAAACTCTGCTATGGATGCTCAATATGGTGCACACCCCATAACTCAATTAGAGAATCCATTTGTAGCATCTGAGAGAAGGGTCACTCGTGATGAGGATGTTTTAAGGATAGAAAGGAAACGAAAGAATGAAGGAGCTAGAATGGCACGTGAAGTTGAAGCGCATGAGAAAAGGATTCGGAAGGAGCTTGAAAAACAAGATATCATGAGGAGAAAGAGAGAGGAACAAGAAAGAAAAGAAATGGAAAGGCATGACCGTGAGAGGCGTAAAGAAGAAGAAAGGTTGTTGCGTGAAAAGCAGAAAGAGGAAGAGAGACTCATAAGAGAGCAAAGACGCGAAATGGAGAGAAGAGAGAAGTTCATACAGAAGGAGTCCATTAGAGCTGAGAAAATGAAACAAAAAGAAGAGATGCGCAGAGAAAAGAAGGCAGCCAGACTTAAAGTAGCTCATGAAAGAGCTATTGCTAGAAGGATTGCAAGAGAATCAGTGGAACTTATTGACGATGAACGCTTGGAGATAATGGAATTGGCTGCCTCTAACAAGGGGTTGCCTAGCATACAATCACTTGACTATGAAGCTTTGCAAAATATTGAATTATATAGAGATATGCTGATTACTTTCCCCCCAAAATCTATGGAAATGAAAAAGCCTTTCTCAAATCAACCTTGGATTGATTCTGAGGATTACGTGGGCAACTTACTCATGGTCTGGAGGTTCTTAATTACCTTTGCAGATGTTCTCGGCCTTTGGCCGTTTACTCTTGATGAATTTGTTCAGGCTTTTCACGATTATGATCCGAGGTTGTTGGGTGAGGTACACGTTGCTCTTCTGAGATCTATCATCAAAGACATTGAAGATGTTGCCAGAACACCATCTGGGTTTGGCGCAAATCAGAACTGTGCTGCCAATCCCAGTGGTGGTCATCCACAAATAGTTGAAGGGGCATATGCTTGGGGTTTCAATATTTGCAGCTGGCAGCGTCACCTAAATCTCTTGACATGGCCCGAGATACTGCGGCAGTTAGCACTATCAGCAGGTTTTGGGCCACAGCTGAAGAAAAAGAATATTGAACCAACATATGTGCGGGATGAAAATGAGTGTAATGAAGGCGAAGATGTAGTTTCTAACTTACGCAATGGAGCCGCGGCAGGAAACGCTTTTGCTAGAATGCAAGAGAGAGGCTTTTTCAATCAACGCAGGTCAAGGCATCGGTTGACCCCTGGAACAGTCAAATTTGCAGCATTTCATGTTCTTTCACTTGAAGGAAGCAATGGCCTTTCTATTTTAGAAGTAGCTGACAGGATTCAGAAATCTGGCCTTCGAGATCTAACGACAAGCAAGACTCCGGAGGCTTCTATAGCTGCTGCTTTGTCAAGAGACTCAAAGCTTTTTGAAAGGACAGCTCCTTCAACATATTGTGTGCGTCTTGCTTATAGGAAAGATCCGGCTGATGCTGAGGAAATACTTTCTACTGCCAGGGAAAGAATTCGCATAGTTAAAAGTGGGTTTCTCGACGGAGAAGATGCTGATGATGCCGAAAGAGACGAAGATTCAGATAGCGATGTGGCTGAGGATCCCGAGGTAGATGATTTAGGTACAGAAATGAGTATAAAGAAAGAAGCTCAACCATCTCATGGACAGACTTTTGAGACACCTTTAGGAAATGGAAGCAGACACAGTGAGATTGTCCAAACTCCTGAAAGTGGTGATAGAAACAGAGGTTCAGAATTCTCATCAATGATTCCTGAGCGAATTGAGAGTGCAAAACAAGCAAGCACTTCTTTCAACCTGTCAACCAATACTCTTTATCAAGCAGATACAGATATCGATGAAAGCAAATCTGGTGAACCATGGGAGCGTTTAGAGGCAGCAAAAGCGTTAAAGAAGCAAATGTGGGAAGACTCACAACTCGATAAACGCCGCATAAAAGATGAGCATCTTGTGAAGATGAATTACCCATCTTCTCAAGGTAACAAGACAGAGCCCAACCTGAAAATTACTTTATCAGCTCTTGTTAATTGTGATGAAAAAAATAAGGAGACTTCATCAAACCCTGATATCCAACAAGATTCCTTTAGTGCGATAAAGAATGAACATGACGAATTTAATAATTTTCCTCCTGATGGAAACCTTCAAATGCAAGAGTACCCCAGTGGCATCAACAACGAGAGGTGTCAACAGATGAGTTTTGCTGCTGAGAAGTCTCGCTCCCAGTTAAAATCCGTCATTGGCCATAGGGCAGAAGAGATTTATGTTTATAGATCGTTGCCTTTTGGTCAGGACCGCAGGCGAAATAGATACTGGCAGTTTGTTACGTCTGCTTCACAAAATGACCCCGGCTGTGGCAGAATTTTCGTTGAACTGCGAAATGGCTGCTGGAGACTTATTGATTCTGAAGAGGGTTTTGACGCTCTCGTAGCAGCTTTGGATGTACGTGGGACTAGGGAATCTCATCTGCACACAGTCTTAAAAAAGATAGAGACTTCCTTTAAGGAAACTAGTCAGAGGAAGATCCGACTAGCTTACAACGGGAAGCAGAATGAAAAATCTACCCTATCGAGTTCCAATAAAATGCCTCCTGATCAAGATTGCAATGCTAATGCAGACAGTCCAAGTAGTACTATATGCATAACTGATTCTGATGCTGAGGCTTCATCTTCTTTCACGATTGAGCTCGGAAGGAATGAATCGGAGAAAAAAGGGGCCATAAGGAGATACCTAGATTTTGAAAAGTGGATGTGGAGAGAATGCTTTAAGTCGTCGATGTTATGTGCTGGGAAGTATGGAAAGATGAGGGGGACGCAATTGCTTAATATCTGCAATTATTGCTCCTTTATTTATTCTTTTGAGGACAATCACTGCTCTTCTTGCCACAAAACATATTATTCCTCTGAGAGTTCAAACATTTCTGAGCATGTGACTCAATGCAGGGAGAAACAGAACTCAGACCTTCATCAAATATTAGATGGTTCGATCTCCACCCCTTTAAGAATTAGATTACTGAAGATGTTATTAGCTTTGATTGAGGATTCAATTTTACCTGAAGCTTTGCAACCTTTCTGGACTGATGGACGGCGAAAATCATGGGGTACGAAGTTGAGTTCCTCGTCATCTGCTGAAGATCTTCTCCAGATTTTAACTATGTTGGAGAGTTCAATTAAGAGGGATCATATATCATCAAACTACGAGACCACCAGTGAACTGTTGGGTCACCCAAATCTATCAGGCTCTTCAGCTGATGATTCTCTCTCTGACGACACCGCTCTTGTACTTCCATGGATGCCATTAACTACAGCTGCAGCTGCTTTAAGACTTATGGAGTTTGATGCATCAGTCTATTATTCACTGCAGCAGAAAATGATGTCTCCTGATCCGGGATCAGAAATCTTCTCGGTGAGTAAATTTCTACTGCTCTACTTGCATTGTCTCCTAAAATATTCGCATCCTTTCTTTTACCTAAGACTTCTTTATACTATATTATCAAAATACTTCCTCATAAGTTTAAGATGGATACTTTTCTTCTTTAAATGCTAA | 4422 | 42.97 | MEDDLEGEKIKQPELENKTKRKMKTASQLEILEKTYAVETYPSESVRAELSVKLGLSDRQLQMWFCHRRLKDRKTPSAKRLKKDSPPPNAATSVGGNGDELEVRNVENDHGSGSGSALASSPYGHGTDLRRGVQRPGVAIARISSDMPPMKRYYESQQTIAELRAIAFVEAQLGEPLREDGPILGMEFDQLPPDAFGAPIGRALHEYQFLPEQPTIRADTYERATTSHYSSPASVQNARVPLVSTGFLHRNEQSASGYPFQGQMSNSNILTQQGSQGHFLPSAVAIYDNVYRKNSIVNSAMDAQYGAHPITQLENPFVASERRVTRDEDVLRIERKRKNEGARMAREVEAHEKRIRKELEKQDIMRRKREEQERKEMERHDRERRKEEERLLREKQKEEERLIREQRREMERREKFIQKESIRAEKMKQKEEMRREKKAARLKVAHERAIARRIARESVELIDDERLEIMELAASNKGLPSIQSLDYEALQNIELYRDMLITFPPKSMEMKKPFSNQPWIDSEDYVGNLLMVWRFLITFADVLGLWPFTLDEFVQAFHDYDPRLLGEVHVALLRSIIKDIEDVARTPSGFGANQNCAANPSGGHPQIVEGAYAWGFNICSWQRHLNLLTWPEILRQLALSAGFGPQLKKKNIEPTYVRDENECNEGEDVVSNLRNGAAAGNAFARMQERGFFNQRRSRHRLTPGTVKFAAFHVLSLEGSNGLSILEVADRIQKSGLRDLTTSKTPEASIAAALSRDSKLFERTAPSTYCVRLAYRKDPADAEEILSTARERIRIVKSGFLDGEDADDAERDEDSDSDVAEDPEVDDLGTEMSIKKEAQPSHGQTFETPLGNGSRHSEIVQTPESGDRNRGSEFSSMIPERIESAKQASTSFNLSTNTLYQADTDIDESKSGEPWERLEAAKALKKQMWEDSQLDKRRIKDEHLVKMNYPSSQGNKTEPNLKITLSALVNCDEKNKETSSNPDIQQDSFSAIKNEHDEFNNFPPDGNLQMQEYPSGINNERCQQMSFAAEKSRSQLKSVIGHRAEEIYVYRSLPFGQDRRRNRYWQFVTSASQNDPGCGRIFVELRNGCWRLIDSEEGFDALVAALDVRGTRESHLHTVLKKIETSFKETSQRKIRLAYNGKQNEKSTLSSSNKMPPDQDCNANADSPSSTICITDSDAEASSSFTIELGRNESEKKGAIRRYLDFEKWMWRECFKSSMLCAGKYGKMRGTQLLNICNYCSFIYSFEDNHCSSCHKTYYSSESSNISEHVTQCREKQNSDLHQILDGSISTPLRIRLLKMLLALIEDSILPEALQPFWTDGRRKSWGTKLSSSSSAEDLLQILTMLESSIKRDHISSNYETTSELLGHPNLSGSSADDSLSDDTALVLPWMPLTTAAAALRLMEFDASVYYSLQQKMMSPDPGSEIFSVSKFLLLYLHCLLKYSHPFFYLRLLYTILSKYFLISLRWILFFFKC | 1473 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6122310 | 6130868 | + | Bda023638.1 | Bda06g00392 | 7974 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda06g00392 | 1473 | Pfam | DDT domain | 525 | 579 | IPR018501 | - | |
| Bda06g00392 | 1473 | SMART | testlast3 | 523 | 582 | IPR018501 | - | |
| Bda06g00392 | 1473 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Bda06g00392 | 1473 | MobiDBLite | consensus disorder prediction | 1142 | 1166 | - | - | |
| Bda06g00392 | 1473 | Gene3D | - | 9 | 89 | - | - | |
| Bda06g00392 | 1473 | Coils | Coil | 355 | 413 | - | - | |
| Bda06g00392 | 1473 | MobiDBLite | consensus disorder prediction | 366 | 390 | - | - | |
| Bda06g00392 | 1473 | CDD | homeodomain | 18 | 75 | IPR001356 | GO:0003677 | |
| Bda06g00392 | 1473 | ProSiteProfiles | HARE-type HTH domain profile. | 704 | 773 | IPR007759 | GO:0006355 | |
| Bda06g00392 | 1473 | ProSiteProfiles | DDT domain profile. | 523 | 582 | IPR018501 | - | |
| Bda06g00392 | 1473 | MobiDBLite | consensus disorder prediction | 75 | 131 | - | - | |
| Bda06g00392 | 1473 | Coils | Coil | 15 | 35 | - | - | |
| Bda06g00392 | 1473 | Pfam | Homeodomain | 18 | 74 | IPR001356 | GO:0003677 | |
| Bda06g00392 | 1473 | Coils | Coil | 419 | 443 | - | - | |
| Bda06g00392 | 1473 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 704 | 771 | IPR007759 | GO:0006355 | |
| Bda06g00392 | 1473 | MobiDBLite | consensus disorder prediction | 804 | 826 | - | - | |
| Bda06g00392 | 1473 | SUPERFAMILY | Homeodomain-like | 16 | 74 | IPR009057 | - | |
| Bda06g00392 | 1473 | MobiDBLite | consensus disorder prediction | 836 | 871 | - | - | |
| Bda06g00392 | 1473 | MobiDBLite | consensus disorder prediction | 800 | 872 | - | - | |
| Bda06g00392 | 1473 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1050 | 1122 | IPR028941 | - | |
| Bda06g00392 | 1473 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 915 | 1422 | - | - | |
| Bda06g00392 | 1473 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 1 | 914 | - | - | |
| Bda06g00392 | 1473 | SMART | HOX_1 | 17 | 79 | IPR001356 | GO:0003677 | |
| Bda06g00392 | 1473 | ProSiteProfiles | 'Homeobox' domain profile. | 15 | 75 | IPR001356 | GO:0003677 | |
| Bda06g00392 | 1473 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 915 | 1422 | IPR044977 | GO:0006357 | |
| Bda06g00392 | 1473 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 1 | 914 | IPR044977 | GO:0006357 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda02g00512 | Bda-Chr2:46028137 | Bda06g00392 | Bda-Chr6:6122310 | 0 | dispersed | |
| Bda02g00622 | Bda-Chr2:47154142 | Bda06g00392 | Bda-Chr6:6122310 | 1.24E-06 | dispersed | |
| Bda06g00392 | Bda-Chr6:6122310 | Bda07g01122 | Bda-Chr7:13121660 | 6.70E-07 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16001 | PF15613 | WSD | 1.20E-12 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda06g00392 | - | - | vvi:100250601 | 1678.3 |