Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00399 ATGCCGAAGAACAAAGGTAAGGGAGGAAAGAACAGGAAGAGGGGAAAGAACGAAGCAGACGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGACGGACAAGAATATGCCCAAGTTCTCCGAATGTTGGGTAATGGCAGATGCGAAGCAATGTGCATAGACGGGACAAAACGACTATGCCACATCCGAGGAAAGATGCACAAGAAAGTGTGGATTGCAGCTGGTGATATCATTCTCGTTGGCCTTCGTGATTATCAGGACGATAAAGCTGACGTAATCCTTAAATACATGCCTGATGAGGCTAGGCTTTTGAAGGCTTATGGGGAGCTTCCTGATAACACTCGTCTCAACGAGGGCATTGCTGGTGGGATCGACGACGAGGATGATGCTGGAGGCGAAGATTACATCGAGTTTGAAGATGAAGATATCGATAAAATCTAG 438 46.8 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDNTRLNEGIAGGIDDEDDAGGEDYIEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6183338 6183775 + Bda023645.2 Bda06g00399 7981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00399 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Bda06g00399 145 Gene3D - 2 145 IPR012340 -
Bda06g00399 145 MobiDBLite consensus disorder prediction 1 25 - -
Bda06g00399 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Bda06g00399 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Bda06g00399 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Bda06g00399 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bda06g00399 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
Bda06g00399 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Bda06g00399 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Bda06g00399 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bda06g00399 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00399 Bda-Chr6:6183338 Bda06g00402 Bda-Chr6:6219720 1.33E-98 dispersed
Bda06g00397 Bda-Chr6:6177240 Bda06g00399 Bda-Chr6:6183338 1.35E-101 proximal
Bda06g00399 Bda-Chr6:6183338 Bda06g00400 Bda-Chr6:6212183 4.33E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00399 K03236 - fve:101293411 236.498