Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00409 ATGTCAAACAGACTGTATTATCAGCCAACGCAAGAAGTAGATTCCTATTGTTTGCCTCAGCTTCAAAGTCTGCCCTCGGGTCCTGGCAAAAAGAGGCCCTACTTCACTAAGCCAAATTTCGACACTAGTTACTGCACTTTGGAATCATCTCCTGCATTTCCATCAACTATTTCTTTCTCCTCCAATGGAAGCCAAAAGTCACTCCGAGACTCATACTCACATTCGACCGATAAGCGTTATTCTCCAGACAACTCCTATGGCTCTCCGATCAGCAGCTCCTGCATAACCGACGATGTTAATGAACTGAAGCACAAATTACTGGTGTTGGAAAATGTAATGATGGGCCCTGACTTTGATGTTTTTGACAATCCCGATCCTGAAAGCTGGGGACAAATTATGGACTCAATTTCTCGAGGTGATCTAAGAAAGGTTCTCATCTCTTGTGCCAAAGCCGTGTCGGATAATAACTCGATAGTGGCTCAATGGTTAGTGGATGAACTTCGGAAGATGGTATCTGTTTCTGGCGAACCAATGCAAAGGCTGGGTGCATATATGTTGGAAGGGCTTGTTGCTCGACTATCGTCATCAGGTAGTTGCATTTACAAAGCTTTGAGGGGTAAAGAACCAGCCAGTAGTGAGCTTCTCTCTTACATGCATACTCTCTACGAGGCCTGTCCCTACTTCAAATTTGGATACATGTCTGCAAATGGTGCAATTGCAGAAGCCATGAAAGATGAAGACAGAGTTCACATTATAGATTTTCAGATAGCTCAAGGAAGTCAGTGGATCACGCTCATTCAAGCCTTTGCAGCTCGCCCGGGTGGACCTCCCCACATAAAAATAACGGCAGGGATTGATGATTCCATGTCAGCTTACGCACGAGGAGGAGGACACCATATTGTTGGAAAACGCCTTTCGAAGCTAGCGAAGACATTCAAAGTCCCGTTTGAGTTTTGTGCAGCAGCCGTGTCAGGTCGAGAGGTTCAGCCCAAAAATCTCAATGTTCAACCGGGCGAGGCTGTTGCTGTGAATTTTGCTTTTATCCTTCACCACATGCCTGATGAGAGTGTAAGCACGGAAAATCACAGAGACAAGCTCTTAAGGCTGGCTAAGAGCCTATCTCCAAAAGTAGTGACACTTGTCGAGCAAGAATCTAACACAAATACCGCAACTTTCTGTTCTCGTTTCAGTGAGGCTCTCGATTACTATAATGCTATGTTTGAGTCAATCGATGCTACTCTTCCAAGGGAGCACAAGGACAGAATCAACATAGAGCAACACTGCCTAGCCCAAGAAGTCGTTAATACAATAGCTTGTGAAGGGCCGGAGAGAGTCGAAAGACATGAGCTTCTCGGGAAATGGAGGTCCCGTTTTAGGATGGCGGGATTTTCCCCATATTCTTTGAGCTCTCTGGTCAATTCAACCATTAAAACACTGTTAGAGAACTACTGTAATAGATATAGACTTGAGGAGAGAGAAGGGGCTCTCTTTCTTGGTTGGATGGACAGAGATTTGGTTGCTTCTTCTGCATGGAAATGA 1539 45.03 MSNRLYYQPTQEVDSYCLPQLQSLPSGPGKKRPYFTKPNFDTSYCTLESSPAFPSTISFSSNGSQKSLRDSYSHSTDKRYSPDNSYGSPISSSCITDDVNELKHKLLVLENVMMGPDFDVFDNPDPESWGQIMDSISRGDLRKVLISCAKAVSDNNSIVAQWLVDELRKMVSVSGEPMQRLGAYMLEGLVARLSSSGSCIYKALRGKEPASSELLSYMHTLYEACPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIKITAGIDDSMSAYARGGGHHIVGKRLSKLAKTFKVPFEFCAAAVSGREVQPKNLNVQPGEAVAVNFAFILHHMPDESVSTENHRDKLLRLAKSLSPKVVTLVEQESNTNTATFCSRFSEALDYYNAMFESIDATLPREHKDRINIEQHCLAQEVVNTIACEGPERVERHELLGKWRSRFRMAGFSPYSLSSLVNSTIKTLLENYCNRYRLEEREGALFLGWMDRDLVASSAWK 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6245748 6247435 - Bda023655.1 Bda06g00409 7991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00409 512 MobiDBLite consensus disorder prediction 58 87 - -
Bda06g00409 512 Pfam GRAS domain family 141 512 IPR005202 -
Bda06g00409 512 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 10 512 - -
Bda06g00409 512 ProSiteProfiles GRAS family profile. 132 512 IPR005202 -
Bda06g00409 512 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 512 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00409 - - - tcc:18612432 764.222
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00409 Bda13g00599 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00689 Bda-Chr1:34048835 Bda06g00409 Bda-Chr6:6245748 3.99E-143 dispersed
Bda06g00409 Bda-Chr6:6245748 Bda09g01581 Bda-Chr9:47274577 0 dispersed
Bda06g00693 Bda-Chr6:9554494 Bda06g00409 Bda-Chr6:6245748 3.80E-69 dispersed
Bda14g00135 Bda-Chr14:943576 Bda06g00409 Bda-Chr6:6245748 4.27E-71 dispersed
Bda14g01018 Bda-Chr14:8556882 Bda06g00409 Bda-Chr6:6245748 3.02E-14 dispersed
Bda15g00713 Bda-Chr15:10535709 Bda06g00409 Bda-Chr6:6245748 2.99E-67 dispersed
Bda06g00409 Bda-Chr6:6245748 Bda13g00599 Bda-Chr13:6981834 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g674 Blo02g00135 Blo15g00454 Bda06g00409 Bda13g00599 . . . . . . Cma02g00217 Cma20g00670 . Car20g00575 . . . . . . . . . . . . . . . . . Cone3ag1294 Cone10ag1246 . . . . Chy11g00700 . . . . . Bpe14g00729 Bpe07g00645 Bma02g01308 Bma12g00842 . Cmo02g00224 Cmo20g00673 . . . . Cpe16g00391 Cpe05g01400 Bhi10g01329 . . . . . . . . . . . . . . Csa06g00941 . Cme11g00929
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00579 . 1 169 GRAS Transcription Factor Family AT2G29060 61.2 2.0e-60 230.7
Bda03g01464 . 75 743 GRAS Transcription Factor Family AT2G37650 55.5 4.7e-204 708.0
Bda03g01462 . 75 743 GRAS Transcription Factor Family AT2G37650 55.4 6.1e-204 707.6
Bda07g00579 . 1 169 GRAS Transcription Factor Family AT2G37650 57.4 8.0e-55 212.2
Bda03g01462 . 287 744 GRAS Transcription Factor Family AT3G46600 50.7 9.8e-125 444.1
Bda03g01464 . 288 744 GRAS Transcription Factor Family AT3G46600 50.5 2.8e-124 442.6
Bda07g00579 . 3 170 GRAS Transcription Factor Family AT3G46600 58.3 7.4e-56 215.3
Bda11g01470 . 23 453 GRAS Transcription Factor Family AT3G49950 60.7 1.2e-140 496.5
Bda14g01275 . 38 451 GRAS Transcription Factor Family AT3G49950 59.7 4.3e-133 471.5
Bda07g00579 . 1 170 GRAS Transcription Factor Family AT1G07530 58.8 2.6e-59 227.3
Bda14g01018 . 361 594 GRAS Transcription Factor Family AT4G36710 59.0 6.5e-72 268.5
Bda01g00083 . 361 743 GRAS Transcription Factor Family AT5G41920 56.3 1.2e-116 416.8
Bda14g01092 . 330 710 GRAS Transcription Factor Family AT5G41920 55.6 7.5e-114 407.5
Bda05g00646 . 1 246 GRAS Transcription Factor Family AT5G41920 69.6 3.3e-93 339.0
Bda04g00052 CCT 1 612 GRAS Transcription Factor Family AT5G66770 59.9 1.2e-189 659.8
Bda11g01872 CCT 1 593 GRAS Transcription Factor Family AT5G66770 53.1 1.2e-157 553.5
Bda06g00409 BCT 88 512 GRAS Transcription Factor Family AT1G50600 62.2 1.6e-148 523.1
Bda09g01581 . 108 546 GRAS Transcription Factor Family AT1G50600 57.0 6.0e-140 494.6
Bda07g00332 . 194 572 GRAS Transcription Factor Family AT1G50600 61.5 3.8e-134 475.3
Bda13g00599 BCT 95 450 GRAS Transcription Factor Family AT1G50600 63.3 2.6e-127 452.6
Bda01g00689 BCT 210 579 GRAS Transcription Factor Family AT1G50600 50.8 8.2e-105 377.9
Bda09g00057 . 1 636 GRAS Transcription Factor Family AT1G63100 53.5 9.4e-175 610.5
Bda11g00148 . 33 572 GRAS Transcription Factor Family AT1G14920 66.1 7.6e-199 690.3
Bda01g01823 . 33 577 GRAS Transcription Factor Family AT1G14920 64.5 3.0e-195 678.3
Bda13g01801 . 47 586 GRAS Transcription Factor Family AT1G14920 62.3 1.9e-189 659.1
Bda01g01147 . 47 586 GRAS Transcription Factor Family AT1G14920 62.3 5.6e-186 647.5
Bda13g01801 . 42 587 GRAS Transcription Factor Family AT1G66350 63.8 1.6e-190 662.5
Bda01g01147 . 42 587 GRAS Transcription Factor Family AT1G66350 64.2 8.9e-189 656.8
Bda11g00148 . 1 573 GRAS Transcription Factor Family AT1G66350 55.7 1.6e-166 582.8
Bda01g01823 . 1 577 GRAS Transcription Factor Family AT1G66350 54.3 8.1e-166 580.5
Bda09g01510 . 232 781 GRAS Transcription Factor Family AT1G07520 52.4 1.9e-154 542.7
Bda07g00579 . 3 170 GRAS Transcription Factor Family AT1G07520 55.3 3.7e-52 203.0
Bda06g00409 BCT 5 512 GRAS Transcription Factor Family AT5G48150 62.7 1.0e-178 623.2
Bda09g01581 . 96 546 GRAS Transcription Factor Family AT5G48150 58.9 1.5e-148 523.1
Bda13g00599 BCT 9 450 GRAS Transcription Factor Family AT5G48150 60.7 4.0e-146 515.0
Bda07g00332 . 79 572 GRAS Transcription Factor Family AT5G48150 52.7 8.1e-139 490.7
Bda01g00689 BCT 188 579 GRAS Transcription Factor Family AT5G48150 51.8 2.0e-113 406.4
Bda12g00952 . 25 330 GRAS Transcription Factor Family AT5G48150 51.9 2.0e-81 300.1
Bda11g00148 . 35 572 GRAS Transcription Factor Family AT2G01570 66.9 8.1e-202 700.3
Bda01g01823 . 35 577 GRAS Transcription Factor Family AT2G01570 64.6 3.9e-196 681.4
Bda13g01801 . 49 584 GRAS Transcription Factor Family AT2G01570 63.8 1.3e-191 666.4
Bda01g01147 . 49 584 GRAS Transcription Factor Family AT2G01570 62.7 5.6e-187 651.0
Bda13g01801 . 42 587 GRAS Transcription Factor Family AT1G66350 63.8 1.6e-190 662.5
Bda01g01147 . 42 587 GRAS Transcription Factor Family AT1G66350 64.2 8.9e-189 656.8
Bda11g00148 . 1 573 GRAS Transcription Factor Family AT1G66350 55.7 1.6e-166 582.8
Bda01g01823 . 1 577 GRAS Transcription Factor Family AT1G66350 54.3 8.1e-166 580.5
Bda13g01801 . 49 584 GRAS Transcription Factor Family AT3G03450 63.3 2.1e-188 655.6
Bda01g01147 . 49 584 GRAS Transcription Factor Family AT3G03450 63.0 9.9e-186 646.7
Bda11g00148 . 35 572 GRAS Transcription Factor Family AT3G03450 58.6 1.1e-168 590.1
Bda01g01823 . 10 577 GRAS Transcription Factor Family AT3G03450 56.0 2.7e-167 585.5
Bda01g01147 . 48 586 GRAS Transcription Factor Family AT5G17490 60.1 9.8e-167 583.6
Bda13g01801 . 48 585 GRAS Transcription Factor Family AT5G17490 59.1 2.9e-166 582.0
Bda11g00148 . 1 570 GRAS Transcription Factor Family AT5G17490 51.8 8.6e-147 517.3
Bda01g01823 . 1 577 GRAS Transcription Factor Family AT5G17490 50.7 1.5e-143 506.5
Bda01g00689 BCT 1 579 GRAS Transcription Factor Family AT1G21450 60.3 8.5e-183 637.1
Bda03g00027 BCT 1 497 GRAS Transcription Factor Family AT1G21450 54.2 3.7e-162 568.5
Bda06g00409 BCT 136 512 GRAS Transcription Factor Family AT1G21450 51.1 1.1e-110 397.5
Bda07g00332 . 204 572 GRAS Transcription Factor Family AT1G21450 52.4 4.7e-109 392.1
Bda13g00599 BCT 141 463 GRAS Transcription Factor Family AT1G21450 53.3 4.2e-97 352.4
Bda03g01462 . 360 744 GRAS Transcription Factor Family AT5G59450 53.9 4.6e-123 438.7
Bda03g01464 . 360 744 GRAS Transcription Factor Family AT5G59450 53.9 4.6e-123 438.7
Bda07g00579 . 1 170 GRAS Transcription Factor Family AT5G59450 57.0 4.1e-55 213.0
Bda09g01581 . 1 546 GRAS Transcription Factor Family AT4G17230 58.3 1.1e-170 596.7
Bda06g00409 BCT 16 512 GRAS Transcription Factor Family AT4G17230 51.0 8.8e-131 464.2
Bda13g00599 BCT 19 450 GRAS Transcription Factor Family AT4G17230 52.1 4.2e-117 418.7
Bda06g00409 BCT 132 512 GRAS Transcription Factor Family AT2G04890 67.7 1.1e-149 526.6
Bda07g00332 . 195 572 GRAS Transcription Factor Family AT2G04890 58.7 4.6e-127 451.4
Bda09g01581 . 166 546 GRAS Transcription Factor Family AT2G04890 59.8 8.7e-126 447.2
Bda13g00599 BCT 137 450 GRAS Transcription Factor Family AT2G04890 67.2 1.9e-120 429.5
Bda01g00689 BCT 210 579 GRAS Transcription Factor Family AT2G04890 50.5 1.6e-103 373.2
Bda03g00027 BCT 128 497 GRAS Transcription Factor Family AT2G04890 50.5 2.1e-103 372.9
Bda12g00952 . 131 330 GRAS Transcription Factor Family AT2G04890 59.0 1.4e-62 237.3
Bda07g00753 . 1 464 GRAS Transcription Factor Family AT1G50420 66.9 1.4e-172 602.8
Bda14g00447 . 1 464 GRAS Transcription Factor Family AT1G50420 58.6 7.9e-155 543.9
Bda01g00083 . 120 739 GRAS Transcription Factor Family AT3G54220 64.7 1.2e-209 726.5
Bda14g01092 . 108 708 GRAS Transcription Factor Family AT3G54220 63.0 1.0e-205 713.4
Bda04g00644 . 125 488 GRAS Transcription Factor Family AT3G54220 54.0 5.6e-111 398.7
Bda05g00646 . 1 244 GRAS Transcription Factor Family AT3G54220 65.6 3.9e-88 322.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003195 1 8 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16003 PF03514 GRAS 1.10E-133 CL0063 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00409 Bda_Chr06 FPKM 4.871613 5.108552 0.546199 0.280409 8.507339 9.875072 6.663465 2.405758 3.439021