Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00410 ATGGCGGATTCAGACAACGAATCAGGAGGGCATAACAGCAACACGAATAGCGAGCACTCGAGGGAGCAAGATAGATTCTTGCCCATAGCCAATGTAAGCAGAATAATGAAGAAAGCACTACCAGCAAACGCCAAGATCTCGAAAGACGCAAAAGAAACAGTCCAAGAATGTGTATCGGAGTTCATCAGCTTCATCACCGGCGAGGCTTCCGACAAGTGCCAGAGGGAAAAAAGGAAGACGATCAACGGCGACGATTTGTTGTGGGCCATGACTACTTTAGGCTTCGAAGAGTACGTAGAGCCTCTGAAAATTTATCTGCAGAAGTACAGAGAAACGGAAGGAGAGAAGACTTCTGTCGGAAAACAGGGTGACAAAGACGGCGGCGTAGGTGGGTCCAGCTCCGCCAGTGCTGATGCAGCCGGTGCTGTGAGTGGCGGCGGCGGCGGCTTCAATGGAATCGGCGGGATGTACGGCGGGATGATGATGATGGGGCATCATCAGGGACACGCATACGGTTCAGGCGGATATCATCGGATGGGAATCGGCGGTCAGAAAGACGGAACCGGCGGGCCAGCTTCCGGCAACCGGTGA 591 53.3 MADSDNESGGHNSNTNSEHSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYRETEGEKTSVGKQGDKDGGVGGSSSASADAAGAVSGGGGGFNGIGGMYGGMMMMGHHQGHAYGSGGYHRMGIGGQKDGTGGPASGNR 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6267634 6268224 - Bda023656.1 Bda06g00410 7992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00410 196 MobiDBLite consensus disorder prediction 1 24 - -
Bda06g00410 196 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Bda06g00410 196 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Bda06g00410 196 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Bda06g00410 196 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Bda06g00410 196 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 175 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bda06g00410 196 MobiDBLite consensus disorder prediction 1 16 - -
Bda06g00410 196 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda06g00410 196 MobiDBLite consensus disorder prediction 113 141 - -
Bda06g00410 196 Gene3D Histone, subunit A 13 140 IPR009072 GO:0046982
Bda06g00410 196 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 175 - -
Bda06g00410 196 SUPERFAMILY Histone-fold 23 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00410 Bda-Chr6:6267634 Bda12g00962 Bda-Chr12:40824349 2.90E-76 dispersed
Bda05g00681 Bda-Chr5:55134536 Bda06g00410 Bda-Chr6:6267634 7.47E-46 transposed
Bda08g00966 Bda-Chr8:19048930 Bda06g00410 Bda-Chr6:6267634 1.55E-55 transposed
Bda13g00590 Bda-Chr13:6927795 Bda06g00410 Bda-Chr6:6267634 6.52E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16004 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00410 K08065 - csv:101219076 248.054