Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00410 ATGGCGGATTCAGACAACGAATCAGGAGGGCATAACAGCAACACGAATAGCGAGCACTCGAGGGAGCAAGATAGATTCTTGCCCATAGCCAATGTAAGCAGAATAATGAAGAAAGCACTACCAGCAAACGCCAAGATCTCGAAAGACGCAAAAGAAACAGTCCAAGAATGTGTATCGGAGTTCATCAGCTTCATCACCGGCGAGGCTTCCGACAAGTGCCAGAGGGAAAAAAGGAAGACGATCAACGGCGACGATTTGTTGTGGGCCATGACTACTTTAGGCTTCGAAGAGTACGTAGAGCCTCTGAAAATTTATCTGCAGAAGTACAGAGAAACGGAAGGAGAGAAGACTTCTGTCGGAAAACAGGGTGACAAAGACGGCGGCGTAGGTGGGTCCAGCTCCGCCAGTGCTGATGCAGCCGGTGCTGTGAGTGGCGGCGGCGGCGGCTTCAATGGAATCGGCGGGATGTACGGCGGGATGATGATGATGGGGCATCATCAGGGACACGCATACGGTTCAGGCGGATATCATCGGATGGGAATCGGCGGTCAGAAAGACGGAACCGGCGGGCCAGCTTCCGGCAACCGGTGA 591 53.3 MADSDNESGGHNSNTNSEHSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYRETEGEKTSVGKQGDKDGGVGGSSSASADAAGAVSGGGGGFNGIGGMYGGMMMMGHHQGHAYGSGGYHRMGIGGQKDGTGGPASGNR 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6267634 6268224 - Bda023656.1 Bda06g00410 7992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00410 196 MobiDBLite consensus disorder prediction 1 24 - -
Bda06g00410 196 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Bda06g00410 196 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Bda06g00410 196 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Bda06g00410 196 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Bda06g00410 196 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 175 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bda06g00410 196 MobiDBLite consensus disorder prediction 1 16 - -
Bda06g00410 196 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda06g00410 196 MobiDBLite consensus disorder prediction 113 141 - -
Bda06g00410 196 Gene3D Histone, subunit A 13 140 IPR009072 GO:0046982
Bda06g00410 196 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 175 - -
Bda06g00410 196 SUPERFAMILY Histone-fold 23 126 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00410 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101219076 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00410 Bda-Chr6:6267634 Bda12g00962 Bda-Chr12:40824349 2.90E-76 dispersed
Bda05g00681 Bda-Chr5:55134536 Bda06g00410 Bda-Chr6:6267634 7.47E-46 transposed
Bda08g00966 Bda-Chr8:19048930 Bda06g00410 Bda-Chr6:6267634 1.55E-55 transposed
Bda13g00590 Bda-Chr13:6927795 Bda06g00410 Bda-Chr6:6267634 6.52E-92 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda05g00681 . 1 90 CCAAT-HAP3 Transcription Factor Family AT5G47670 90.0 1.2e-42 170.2
Bda13g00590 . 7 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.3 4.3e-37 151.8
Bda06g00410 . 21 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.8 5.6e-37 151.4
Bda05g00681 . 1 128 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.2 5.9e-42 167.9
Bda06g00410 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.8 1.5e-57 219.2
Bda12g00962 CCT 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.0 4.8e-56 214.2
Bda13g00590 . 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.7 1.4e-55 212.6
Bda07g00410 CCT 1 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 7.5e-49 190.3
Bda14g00336 BCT,CCT,ECH 13 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.2 4.2e-44 174.5
Bda15g00184 CCT,ECH 11 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.5 9.5e-44 173.3
Bda14g01019 . 21 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.5 3.6e-43 171.4
Bda03g00753 . 22 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 4.7e-43 171.0
Bda15g00376 BCT,CCT,ECH 11 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.3 6.1e-43 170.6
Bda08g00966 . 9 100 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.9 1.5e-41 166.0
Bda15g00184 CCT,ECH 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.8 1.3e-50 196.1
Bda14g00336 BCT,CCT,ECH 3 119 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.2 8.4e-50 193.4
Bda03g00753 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 5.4e-49 190.7
Bda15g00376 BCT,CCT,ECH 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.2 2.7e-48 188.3
Bda12g00962 CCT 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.0 4.5e-43 171.0
Bda06g00410 . 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 7.6e-43 170.2
Bda13g00590 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 1.7e-42 169.1
Bda07g00410 CCT 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 4.9e-42 167.5
Bda14g01019 . 9 125 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.3 9.3e-41 163.3
Bda08g00966 . 9 98 CCAAT-HAP3 Transcription Factor Family AT2G38880 75.6 1.5e-38 156.0
Bda04g00601 . 67 164 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.6 1.1e-39 159.8
Bda07g00410 CCT 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.3e-39 157.5
Bda12g00962 CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 5.3e-39 157.5
Bda06g00410 . 21 125 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.8 4.5e-38 154.5
Bda13g00590 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 5.9e-38 154.1
Bda14g01019 . 22 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.7 8.5e-37 150.2
Bda15g00184 CCT,ECH 1 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.1 4.4e-55 211.1
Bda15g00376 BCT,CCT,ECH 7 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.9 1.7e-54 209.1
Bda03g00753 . 1 139 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.8 1.4e-53 206.1
Bda14g00336 BCT,CCT,ECH 13 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 85.2 6.1e-49 190.7
Bda06g00410 . 6 124 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.8 4.9e-46 181.0
Bda07g00410 CCT 1 126 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.5 1.1e-45 179.9
Bda13g00590 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 4.1e-45 177.9
Bda12g00962 CCT 17 143 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.4 3.5e-44 174.9
Bda14g01019 . 22 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.5 9.8e-39 156.8
Bda08g00966 . 1 97 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.3 6.4e-38 154.1
Bda06g00410 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 6.0e-46 181.0
Bda08g00966 . 9 106 CCAAT-HAP3 Transcription Factor Family AT2G13570 88.8 1.8e-45 179.5
Bda13g00590 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 3.0e-45 178.7
Bda14g01019 . 3 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.3 1.1e-44 176.8
Bda07g00410 CCT 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.1 1.3e-43 173.3
Bda12g00962 CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 1.1e-42 170.2
Bda03g00753 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.7e-40 162.9
Bda15g00376 BCT,CCT,ECH 26 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.3 2.9e-40 162.2
Bda14g00336 BCT,CCT,ECH 28 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.8 6.5e-40 161.0
Bda15g00184 CCT,ECH 26 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.0 1.4e-39 159.8
Bda04g00601 . 69 167 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.7 6.7e-37 151.0
Bda12g00962 CCT 1 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 5.0e-52 201.1
Bda06g00410 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 2.1e-50 195.7
Bda13g00590 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 6.1e-50 194.1
Bda07g00410 CCT 1 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.7 4.4e-48 188.0
Bda15g00184 CCT,ECH 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.7 8.5e-44 173.7
Bda14g00336 BCT,CCT,ECH 28 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 83.2 7.2e-43 170.6
Bda03g00753 . 19 123 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 9.4e-43 170.2
Bda15g00376 BCT,CCT,ECH 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 3.6e-42 168.3
Bda14g01019 . 17 116 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.0 1.4e-41 166.4
Bda08g00966 . 9 103 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.0 5.7e-40 161.0
Bda15g00184 CCT,ECH 1 136 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.3 1.0e-54 209.9
Bda03g00753 . 16 134 CCAAT-HAP3 Transcription Factor Family AT3G53340 86.2 1.7e-54 209.1
Bda15g00376 BCT,CCT,ECH 12 134 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.2 4.2e-53 204.5
Bda14g00336 BCT,CCT,ECH 3 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.7 2.8e-49 191.8
Bda06g00410 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 5.5e-45 177.6
Bda13g00590 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 7.2e-45 177.2
Bda07g00410 CCT 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 2.7e-44 175.3
Bda12g00962 CCT 17 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.9 1.1e-42 169.9
Bda14g01019 . 22 114 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.5 5.9e-39 157.5
Bda08g00966 . 9 97 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.7 4.2e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16004 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00410 Bda_Chr06 FPKM 2.957594 5.786897 0.876116 1.057773 5.029969 6.683951 6.048063 14.477789 13.755761