Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00414 ATGTCGTCTAAGTCTACGAACAAGACGAACTGTTCAAGAAGCAGCTCTACCAGATCGAAACATGGATCTCGAGTGGTTACACAGACTCCCATTGACGCTAAACTTCATGTTGAATTCGAAGAGACTGAGCAGGGTTTTGATTACTCCACTTCCATCGACTTCAATCTCTCTTGCTCCACCAGCAATGTTCCATCGTCAACAGTTTCGGCTTACCTTCAAAAGATGCAGAGGGGAAAGCTGATTCAACCCTTTGGCTGTATGATTGCCGTTGATGAGGAGAAGTTTTCGGTTCTTGCATATAGCGAAAATGCCCCCGAAATGCTGGACTTGGCCCCACTCGCTGTTCCGAGCATTGAGCAGCAAGATGCTTTGACTTTCGGAACGGATGTTCGAACACTTTTTCAGACCTCGGGTGCTGCTGCCCTGCACAAAGCTAGCAAAATTAGGGAAGTCAACCTTCTAAATCCTATATTGCTTCACTGTAAAACTTCAGGAAAGCCCTTTTATGCAATTCTTCATCGAATTGATGTTGGTTTAGTCATAGATTTAGAACCTGTTAATCTAGCAGATGTACCCGTGACGGCTGCCGGGGCATTGAAATCGTATAAGCTTGCTGCCAAAGCCATCTCAAGATTGCAGTCTCTACCAAGTAGGAATATATCTCTGCTGTGTGATGTGCTGGTCAAAGAAGTTAGTGATTTAACGGGGTATGATCGGGTTATGGTGTATAAATTTCATGAAGATGAACATGGAGAAGTTGTAGCCGAGTGCCACAGGCCCGATTTGGAACCTTATCTGGGTTTACATTACCCGGCTACAGATATACCGCAAGCCTCGAGATTTCTGTTTATGAAGAACAAAGTAAGGATGATATGCGATTGTTTGGCAACTCCAGTTAAAGTTATTCAAGACAGCAGATTGACTCAGCCATTGAGTCTTTGTGGATCGGTTCTGAGATCTCCTCACGGCTGTCATGGACAATATATGGCAAATATGGGTTCAATTGCATCTCTTGTTATGTCTGTGACGATCGACGAGGAGGATAATGAGGTGGAGAGTGATCAGCAGAAGGGAAGAAAATTAAAATTGTGGGGCTTAGTGGTTTGTCATCACACGAGCCCTTGGTTTATCCCATTTCCTTTGCGATATGCCTGCGAGTTCTTGATTCAAGTTTTCAGTATTCAAATCAACAAAGAAGTTGAGCTGGCTGCTCAATTGAGGGAGAAGCATATTTTGCAAACTCAAACTGTTCTTTGCGATATGCTTCTTAGAGATGTCCCTGTGGGAATTGTTACACAATCGCCAAATATAATGGATCTCGTCAAGTGTGATGGAGCCGCTCTTTATTACAAGAAGAGATTCTGGGTTCTAGGAGTTACTCCTTCCGAAGCACAAATTAGAGATATAGCTGATTGGCTTTTTCAGAATCATAGTGGGAGCACTGGGCTGAGTACGGATAGTCTCACGGAAGCTGGCTACCCTGGAGCTTCTGATCTCAGCAATGAGGTTTGCGGGATGGCTGCCATTAAAATCACAGCGAAGGATTTTCTCTTTTGGTTTCGATCCCACATGGCGAAGGAAATCAAGTGGGGCGGAGCAAAACACGATCCGAACGACAAGGATGATGGGCGGAAGATGCATCCCAGGTCGTCTTTCAAGGCTTTCTTGGAGGTTGTGAAGCAGAGAAGTTTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCTTTACAGCTGATAATGCGAGGATCTCTACAGGACGAGATAGAGGAAGACTCCAAAATAATTGTGAATGTTCCCTCAGCAGATGACACGATACAAAGTTTGGATGAATTGCGGGTCGTAACGAATGAAATGGTCCGCCTTATCGAGACAGCTGCTGTCCCCATCTTGGCTGTTGATGCCTCGGGCGTTATAAACGGGTGGAACATCAAAGCTAGTGAACTAACGGGAGTGCCAGTACAAGAAGCAATCGGCAGACTCTTTGTCGATGTTGTTGCTGATGAGTCGGTTGAGGTGGTGAAGAATATGCTTTCCTTGGCCCTGCAAGGTATAGAAGAACGAAATGTGGAAATTAAACTCAAAACATACGGGCCCCAGCAAAGAAATGGCTTGATTATTTTAGTAGTCAATGCTTGTTGTAGCCGAGACACGAATGAAAATATTGTGGGGAGTTGCTTTATCGGACAAGATGTGACTGGACAGAGACTCATTATGGACCAATATACTCGTCTCCAAGGTGATTATAATGGAATTATGCAGAGCCCCTCTACACTTATTCCTCCGATTTTCATGACCGATGAGCATGGCCGATGCTCAGAATGGAATGATGCTATGCAAACATTATCTGGTTTGAAAAGAGAAGAAGCAATCGATAAGATGCTTCTTGGAGAGGTCTTCACCATCAATAGTGTCGGTTGTCGGGTCAAAGATCAAGACACATTGACAAAGCTTAAAATTTTGTTTAATAGGGTGGTTTCAAACCAGGATGTCGACAAATTGTTGTTTGGCTTTTTCGATCGGGAGAACAATTACGTTGAAGCTTTACTTTCTGCAGATAAAAGGGTCGATGCAGAGGGGAGAATCACTAGAGTTTTATGTTTTTTGCATGTGGCGAGTCTGGAACTTAAACATGTTATCCATATGCAGAAAATATCGGAACAGGCTGCGGATGATAGCGTCAAGAAGTTGACGTACCTTCGGAGGGAGATCAGAAAACCGCTCACTGGTATTCAGTTTATGCAGAATCTCATGGGCTCGTCCGATATAAGCGCAGAGCAAAAGCAGCTACTCAAGATAAGCACATCCTGTCAGGATCAATTGGTCAAGATTGTAGATGAAACTGATATCGAGAATATCGAAGAATGCTTTATGGAGATGAGCTCTGGTGAATTCAGCCTGGGAGACGTTCTTGAAGTTGTCATGAATCAAGTCATGATTTTAGGCCAAGAACGACGAATCCAAGTCATCCTCGATTCTCCTTCAGATGCGTCATCGTTTCATTTGTATGGGGACAATTTAAGGCTTCAGCAGGTACTTTCGGATTTTTTGAGTAGCGCTATCATCTTTGTCCCGGCATCTGAAGGATCTTCAGTTTCCCTCAAAGTGATTCCGAAGAAAAAACATATTGGATCCAAAATGTGTATCATTCATCTCGAATTTAGGATCATTCATCCATCTCCCGGAATTCCCGAGATTTTAATCCAAGAGATGTTTCATCACAACAATAACGTCTCAAAGGAAGGTCTTAGTCTATACATCAGCCAGAAGCTTGTGAAGATCATGAATGGCACCGTACAATACCTAAGAGAAGCAGAGAGATCATCCTTCATTATTAAAGTCGAATTCCCACTTGTAAAAAAGATTGATAGATGA 3375 43.41 MSSKSTNKTNCSRSSSTRSKHGSRVVTQTPIDAKLHVEFEETEQGFDYSTSIDFNLSCSTSNVPSSTVSAYLQKMQRGKLIQPFGCMIAVDEEKFSVLAYSENAPEMLDLAPLAVPSIEQQDALTFGTDVRTLFQTSGAAALHKASKIREVNLLNPILLHCKTSGKPFYAILHRIDVGLVIDLEPVNLADVPVTAAGALKSYKLAAKAISRLQSLPSRNISLLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVVAECHRPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLATPVKVIQDSRLTQPLSLCGSVLRSPHGCHGQYMANMGSIASLVMSVTIDEEDNEVESDQQKGRKLKLWGLVVCHHTSPWFIPFPLRYACEFLIQVFSIQINKEVELAAQLREKHILQTQTVLCDMLLRDVPVGIVTQSPNIMDLVKCDGAALYYKKRFWVLGVTPSEAQIRDIADWLFQNHSGSTGLSTDSLTEAGYPGASDLSNEVCGMAAIKITAKDFLFWFRSHMAKEIKWGGAKHDPNDKDDGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLIMRGSLQDEIEEDSKIIVNVPSADDTIQSLDELRVVTNEMVRLIETAAVPILAVDASGVINGWNIKASELTGVPVQEAIGRLFVDVVADESVEVVKNMLSLALQGIEERNVEIKLKTYGPQQRNGLIILVVNACCSRDTNENIVGSCFIGQDVTGQRLIMDQYTRLQGDYNGIMQSPSTLIPPIFMTDEHGRCSEWNDAMQTLSGLKREEAIDKMLLGEVFTINSVGCRVKDQDTLTKLKILFNRVVSNQDVDKLLFGFFDRENNYVEALLSADKRVDAEGRITRVLCFLHVASLELKHVIHMQKISEQAADDSVKKLTYLRREIRKPLTGIQFMQNLMGSSDISAEQKQLLKISTSCQDQLVKIVDETDIENIEECFMEMSSGEFSLGDVLEVVMNQVMILGQERRIQVILDSPSDASSFHLYGDNLRLQQVLSDFLSSAIIFVPASEGSSVSLKVIPKKKHIGSKMCIIHLEFRIIHPSPGIPEILIQEMFHHNNNVSKEGLSLYISQKLVKIMNGTVQYLREAERSSFIIKVEFPLVKKIDR 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6278738 6283086 + Bda023660.1 Bda06g00414 7996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00414 1124 ProSiteProfiles Histidine kinase domain profile. 899 1120 IPR005467 -
Bda06g00414 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 186 IPR035965 -
Bda06g00414 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 965 1116 IPR036890 -
Bda06g00414 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1120 - -
Bda06g00414 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 727 IPR035965 -
Bda06g00414 1124 Pfam GAF domain 220 400 IPR003018 GO:0005515
Bda06g00414 1124 SMART pas_2 617 683 IPR000014 -
Bda06g00414 1124 SMART pas_2 747 816 IPR000014 -
Bda06g00414 1124 Gene3D PAS domain 76 322 - -
Bda06g00414 1124 PANTHER PHYTOCHROME C 1 1120 - -
Bda06g00414 1124 MobiDBLite consensus disorder prediction 1 26 - -
Bda06g00414 1124 PIRSF Phytochrome_conventional 2 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bda06g00414 1124 MobiDBLite consensus disorder prediction 1 27 - -
Bda06g00414 1124 Gene3D PAS domain 757 870 - -
Bda06g00414 1124 SUPERFAMILY GAF domain-like 408 588 - -
Bda06g00414 1124 CDD PAS 759 870 IPR000014 -
Bda06g00414 1124 Gene3D - 931 1112 IPR036890 -
Bda06g00414 1124 CDD HisKA 897 947 IPR003661 GO:0000155|GO:0007165
Bda06g00414 1124 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Bda06g00414 1124 Gene3D - 200 561 IPR029016 -
Bda06g00414 1124 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bda06g00414 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 865 IPR035965 -
Bda06g00414 1124 CDD PAS 626 732 IPR000014 -
Bda06g00414 1124 Gene3D - 405 578 IPR043150 -
Bda06g00414 1124 TIGRFAM sensory_box: PAS domain S-box protein 622 734 IPR000014 -
Bda06g00414 1124 SMART gaf_1 219 410 IPR003018 GO:0005515
Bda06g00414 1124 SMART HKATPase_4 1004 1120 IPR003594 -
Bda06g00414 1124 CDD HATPase_Phy-like 1003 1116 IPR044767 -
Bda06g00414 1124 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bda06g00414 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1004 1115 IPR003594 -
Bda06g00414 1124 Gene3D PAS domain 604 747 - -
Bda06g00414 1124 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Bda06g00414 1124 SUPERFAMILY GAF domain-like 199 397 - -
Bda06g00414 1124 Pfam PAS fold 618 732 IPR013767 GO:0006355
Bda06g00414 1124 Pfam PAS fold 748 870 IPR013767 GO:0006355
Bda06g00414 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 390 IPR016132 -
Bda06g00414 1124 ProSiteProfiles PAS repeat profile. 615 685 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01665 Bda-Chr1:52770489 Bda06g00414 Bda-Chr6:6278738 0 dispersed
Bda06g00414 Bda-Chr6:6278738 Bda07g00948 Bda-Chr7:11021123 0 dispersed
Bda06g00414 Bda-Chr6:6278738 Bda11g00500 Bda-Chr11:5316805 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00414 - - qsu:111989287 1786.54