Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00414 ATGTCGTCTAAGTCTACGAACAAGACGAACTGTTCAAGAAGCAGCTCTACCAGATCGAAACATGGATCTCGAGTGGTTACACAGACTCCCATTGACGCTAAACTTCATGTTGAATTCGAAGAGACTGAGCAGGGTTTTGATTACTCCACTTCCATCGACTTCAATCTCTCTTGCTCCACCAGCAATGTTCCATCGTCAACAGTTTCGGCTTACCTTCAAAAGATGCAGAGGGGAAAGCTGATTCAACCCTTTGGCTGTATGATTGCCGTTGATGAGGAGAAGTTTTCGGTTCTTGCATATAGCGAAAATGCCCCCGAAATGCTGGACTTGGCCCCACTCGCTGTTCCGAGCATTGAGCAGCAAGATGCTTTGACTTTCGGAACGGATGTTCGAACACTTTTTCAGACCTCGGGTGCTGCTGCCCTGCACAAAGCTAGCAAAATTAGGGAAGTCAACCTTCTAAATCCTATATTGCTTCACTGTAAAACTTCAGGAAAGCCCTTTTATGCAATTCTTCATCGAATTGATGTTGGTTTAGTCATAGATTTAGAACCTGTTAATCTAGCAGATGTACCCGTGACGGCTGCCGGGGCATTGAAATCGTATAAGCTTGCTGCCAAAGCCATCTCAAGATTGCAGTCTCTACCAAGTAGGAATATATCTCTGCTGTGTGATGTGCTGGTCAAAGAAGTTAGTGATTTAACGGGGTATGATCGGGTTATGGTGTATAAATTTCATGAAGATGAACATGGAGAAGTTGTAGCCGAGTGCCACAGGCCCGATTTGGAACCTTATCTGGGTTTACATTACCCGGCTACAGATATACCGCAAGCCTCGAGATTTCTGTTTATGAAGAACAAAGTAAGGATGATATGCGATTGTTTGGCAACTCCAGTTAAAGTTATTCAAGACAGCAGATTGACTCAGCCATTGAGTCTTTGTGGATCGGTTCTGAGATCTCCTCACGGCTGTCATGGACAATATATGGCAAATATGGGTTCAATTGCATCTCTTGTTATGTCTGTGACGATCGACGAGGAGGATAATGAGGTGGAGAGTGATCAGCAGAAGGGAAGAAAATTAAAATTGTGGGGCTTAGTGGTTTGTCATCACACGAGCCCTTGGTTTATCCCATTTCCTTTGCGATATGCCTGCGAGTTCTTGATTCAAGTTTTCAGTATTCAAATCAACAAAGAAGTTGAGCTGGCTGCTCAATTGAGGGAGAAGCATATTTTGCAAACTCAAACTGTTCTTTGCGATATGCTTCTTAGAGATGTCCCTGTGGGAATTGTTACACAATCGCCAAATATAATGGATCTCGTCAAGTGTGATGGAGCCGCTCTTTATTACAAGAAGAGATTCTGGGTTCTAGGAGTTACTCCTTCCGAAGCACAAATTAGAGATATAGCTGATTGGCTTTTTCAGAATCATAGTGGGAGCACTGGGCTGAGTACGGATAGTCTCACGGAAGCTGGCTACCCTGGAGCTTCTGATCTCAGCAATGAGGTTTGCGGGATGGCTGCCATTAAAATCACAGCGAAGGATTTTCTCTTTTGGTTTCGATCCCACATGGCGAAGGAAATCAAGTGGGGCGGAGCAAAACACGATCCGAACGACAAGGATGATGGGCGGAAGATGCATCCCAGGTCGTCTTTCAAGGCTTTCTTGGAGGTTGTGAAGCAGAGAAGTTTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCTTTACAGCTGATAATGCGAGGATCTCTACAGGACGAGATAGAGGAAGACTCCAAAATAATTGTGAATGTTCCCTCAGCAGATGACACGATACAAAGTTTGGATGAATTGCGGGTCGTAACGAATGAAATGGTCCGCCTTATCGAGACAGCTGCTGTCCCCATCTTGGCTGTTGATGCCTCGGGCGTTATAAACGGGTGGAACATCAAAGCTAGTGAACTAACGGGAGTGCCAGTACAAGAAGCAATCGGCAGACTCTTTGTCGATGTTGTTGCTGATGAGTCGGTTGAGGTGGTGAAGAATATGCTTTCCTTGGCCCTGCAAGGTATAGAAGAACGAAATGTGGAAATTAAACTCAAAACATACGGGCCCCAGCAAAGAAATGGCTTGATTATTTTAGTAGTCAATGCTTGTTGTAGCCGAGACACGAATGAAAATATTGTGGGGAGTTGCTTTATCGGACAAGATGTGACTGGACAGAGACTCATTATGGACCAATATACTCGTCTCCAAGGTGATTATAATGGAATTATGCAGAGCCCCTCTACACTTATTCCTCCGATTTTCATGACCGATGAGCATGGCCGATGCTCAGAATGGAATGATGCTATGCAAACATTATCTGGTTTGAAAAGAGAAGAAGCAATCGATAAGATGCTTCTTGGAGAGGTCTTCACCATCAATAGTGTCGGTTGTCGGGTCAAAGATCAAGACACATTGACAAAGCTTAAAATTTTGTTTAATAGGGTGGTTTCAAACCAGGATGTCGACAAATTGTTGTTTGGCTTTTTCGATCGGGAGAACAATTACGTTGAAGCTTTACTTTCTGCAGATAAAAGGGTCGATGCAGAGGGGAGAATCACTAGAGTTTTATGTTTTTTGCATGTGGCGAGTCTGGAACTTAAACATGTTATCCATATGCAGAAAATATCGGAACAGGCTGCGGATGATAGCGTCAAGAAGTTGACGTACCTTCGGAGGGAGATCAGAAAACCGCTCACTGGTATTCAGTTTATGCAGAATCTCATGGGCTCGTCCGATATAAGCGCAGAGCAAAAGCAGCTACTCAAGATAAGCACATCCTGTCAGGATCAATTGGTCAAGATTGTAGATGAAACTGATATCGAGAATATCGAAGAATGCTTTATGGAGATGAGCTCTGGTGAATTCAGCCTGGGAGACGTTCTTGAAGTTGTCATGAATCAAGTCATGATTTTAGGCCAAGAACGACGAATCCAAGTCATCCTCGATTCTCCTTCAGATGCGTCATCGTTTCATTTGTATGGGGACAATTTAAGGCTTCAGCAGGTACTTTCGGATTTTTTGAGTAGCGCTATCATCTTTGTCCCGGCATCTGAAGGATCTTCAGTTTCCCTCAAAGTGATTCCGAAGAAAAAACATATTGGATCCAAAATGTGTATCATTCATCTCGAATTTAGGATCATTCATCCATCTCCCGGAATTCCCGAGATTTTAATCCAAGAGATGTTTCATCACAACAATAACGTCTCAAAGGAAGGTCTTAGTCTATACATCAGCCAGAAGCTTGTGAAGATCATGAATGGCACCGTACAATACCTAAGAGAAGCAGAGAGATCATCCTTCATTATTAAAGTCGAATTCCCACTTGTAAAAAAGATTGATAGATGA 3375 43.41 MSSKSTNKTNCSRSSSTRSKHGSRVVTQTPIDAKLHVEFEETEQGFDYSTSIDFNLSCSTSNVPSSTVSAYLQKMQRGKLIQPFGCMIAVDEEKFSVLAYSENAPEMLDLAPLAVPSIEQQDALTFGTDVRTLFQTSGAAALHKASKIREVNLLNPILLHCKTSGKPFYAILHRIDVGLVIDLEPVNLADVPVTAAGALKSYKLAAKAISRLQSLPSRNISLLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVVAECHRPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLATPVKVIQDSRLTQPLSLCGSVLRSPHGCHGQYMANMGSIASLVMSVTIDEEDNEVESDQQKGRKLKLWGLVVCHHTSPWFIPFPLRYACEFLIQVFSIQINKEVELAAQLREKHILQTQTVLCDMLLRDVPVGIVTQSPNIMDLVKCDGAALYYKKRFWVLGVTPSEAQIRDIADWLFQNHSGSTGLSTDSLTEAGYPGASDLSNEVCGMAAIKITAKDFLFWFRSHMAKEIKWGGAKHDPNDKDDGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLIMRGSLQDEIEEDSKIIVNVPSADDTIQSLDELRVVTNEMVRLIETAAVPILAVDASGVINGWNIKASELTGVPVQEAIGRLFVDVVADESVEVVKNMLSLALQGIEERNVEIKLKTYGPQQRNGLIILVVNACCSRDTNENIVGSCFIGQDVTGQRLIMDQYTRLQGDYNGIMQSPSTLIPPIFMTDEHGRCSEWNDAMQTLSGLKREEAIDKMLLGEVFTINSVGCRVKDQDTLTKLKILFNRVVSNQDVDKLLFGFFDRENNYVEALLSADKRVDAEGRITRVLCFLHVASLELKHVIHMQKISEQAADDSVKKLTYLRREIRKPLTGIQFMQNLMGSSDISAEQKQLLKISTSCQDQLVKIVDETDIENIEECFMEMSSGEFSLGDVLEVVMNQVMILGQERRIQVILDSPSDASSFHLYGDNLRLQQVLSDFLSSAIIFVPASEGSSVSLKVIPKKKHIGSKMCIIHLEFRIIHPSPGIPEILIQEMFHHNNNVSKEGLSLYISQKLVKIMNGTVQYLREAERSSFIIKVEFPLVKKIDR 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6278738 6283086 + Bda023660.1 Bda06g00414 7996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00414 1124 ProSiteProfiles Histidine kinase domain profile. 899 1120 IPR005467 -
Bda06g00414 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 186 IPR035965 -
Bda06g00414 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 965 1116 IPR036890 -
Bda06g00414 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1120 - -
Bda06g00414 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 727 IPR035965 -
Bda06g00414 1124 Pfam GAF domain 220 400 IPR003018 GO:0005515
Bda06g00414 1124 SMART pas_2 617 683 IPR000014 -
Bda06g00414 1124 SMART pas_2 747 816 IPR000014 -
Bda06g00414 1124 Gene3D PAS domain 76 322 - -
Bda06g00414 1124 PANTHER PHYTOCHROME C 1 1120 - -
Bda06g00414 1124 MobiDBLite consensus disorder prediction 1 26 - -
Bda06g00414 1124 PIRSF Phytochrome_conventional 2 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bda06g00414 1124 MobiDBLite consensus disorder prediction 1 27 - -
Bda06g00414 1124 Gene3D PAS domain 757 870 - -
Bda06g00414 1124 SUPERFAMILY GAF domain-like 408 588 - -
Bda06g00414 1124 CDD PAS 759 870 IPR000014 -
Bda06g00414 1124 Gene3D - 931 1112 IPR036890 -
Bda06g00414 1124 CDD HisKA 897 947 IPR003661 GO:0000155|GO:0007165
Bda06g00414 1124 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Bda06g00414 1124 Gene3D - 200 561 IPR029016 -
Bda06g00414 1124 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Bda06g00414 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bda06g00414 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 865 IPR035965 -
Bda06g00414 1124 CDD PAS 626 732 IPR000014 -
Bda06g00414 1124 Gene3D - 405 578 IPR043150 -
Bda06g00414 1124 TIGRFAM sensory_box: PAS domain S-box protein 622 734 IPR000014 -
Bda06g00414 1124 SMART gaf_1 219 410 IPR003018 GO:0005515
Bda06g00414 1124 SMART HKATPase_4 1004 1120 IPR003594 -
Bda06g00414 1124 CDD HATPase_Phy-like 1003 1116 IPR044767 -
Bda06g00414 1124 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bda06g00414 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1004 1115 IPR003594 -
Bda06g00414 1124 Gene3D PAS domain 604 747 - -
Bda06g00414 1124 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Bda06g00414 1124 SUPERFAMILY GAF domain-like 199 397 - -
Bda06g00414 1124 Pfam PAS fold 618 732 IPR013767 GO:0006355
Bda06g00414 1124 Pfam PAS fold 748 870 IPR013767 GO:0006355
Bda06g00414 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 390 IPR016132 -
Bda06g00414 1124 ProSiteProfiles PAS repeat profile. 615 685 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00414 - - - qsu:111989287 1786.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01665 Bda-Chr1:52770489 Bda06g00414 Bda-Chr6:6278738 0 dispersed
Bda06g00414 Bda-Chr6:6278738 Bda07g00948 Bda-Chr7:11021123 0 dispersed
Bda06g00414 Bda-Chr6:6278738 Bda11g00500 Bda-Chr11:5316805 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01830 . 533 1712 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1443.7
Bda14g00969 . 504 1648 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1357.0
Bda13g00598 . 305 1278 Histidine Kinase Gene Family AT2G01830 51.7 1.5e-270 929.5
Bda06g00425 . 197 1076 Histidine Kinase Gene Family AT2G01830 53.3 6.4e-250 860.9
Bda01g00649 . 1 1022 Histidine Kinase Gene Family AT5G10720 54.8 3.5e-284 974.5
Bda01g01665 . 2 1120 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1753.0
Bda06g00414 . 12 1121 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1250.7
Bda11g00500 CCT 29 1120 Histidine Kinase Gene Family AT1G09570 53.0 0.0e+00 1164.1
Bda01g00824 . 36 875 Histidine Kinase Gene Family AT1G09570 54.3 2.6e-265 912.1
Bda08g00333 CCT 1 680 Histidine Kinase Gene Family AT1G09570 52.1 6.9e-202 701.4
Bda11g00500 CCT 30 1061 Histidine Kinase Gene Family AT2G18790 76.6 0.0e+00 1604.0
Bda07g00948 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1223.8
Bda01g00824 . 15 877 Histidine Kinase Gene Family AT2G18790 66.0 0.0e+00 1152.9
Bda06g00414 . 23 1076 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1114.8
Bda01g01665 . 22 1055 Histidine Kinase Gene Family AT2G18790 51.0 1.0e-306 1049.7
Bda08g00333 CCT 1 616 Histidine Kinase Gene Family AT2G18790 73.8 3.0e-269 925.2
Bda06g00414 . 10 1119 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1400.6
Bda11g00500 CCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1123.6
Bda01g01665 . 10 1115 Histidine Kinase Gene Family AT5G35840 50.5 0.0e+00 1103.6
Bda01g00824 . 40 871 Histidine Kinase Gene Family AT5G35840 52.1 1.1e-255 880.2
Bda11g00500 CCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1639.0
Bda07g00948 . 36 1107 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1250.0
Bda06g00414 . 24 1118 Histidine Kinase Gene Family AT4G16250 52.2 0.0e+00 1135.6
Bda01g00824 . 35 875 Histidine Kinase Gene Family AT4G16250 64.7 0.0e+00 1115.9
Bda08g00333 CCT 1 676 Histidine Kinase Gene Family AT4G16250 71.4 7.2e-287 983.8
Bda07g00948 . 14 1108 Histidine Kinase Gene Family AT4G18130 60.6 0.0e+00 1332.0
Bda11g00500 CCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1252.7
Bda01g00824 . 14 871 Histidine Kinase Gene Family AT4G18130 68.5 0.0e+00 1168.7
Bda08g00333 CCT 1 677 Histidine Kinase Gene Family AT4G18130 54.3 1.6e-211 733.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00414 Bda_Chr06 FPKM 12.184123 12.809343 9.146433 10.845174 5.766711 5.491757 5.78024 2.021908 1.65865