Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00425 ATGGCTCAGAATTGCAAGTTCTCTGTTTCTGGTGGGGAAGTGTCGACTGGGTTGAGATTGAAGAAGGCGAAGGAAGATCGAAATGGCCCTTGTTCAGTAATTAAGTTGCAAAGAAGGATTCTTCTTCTCTTTGTCGTCGGTCTAGTTTTACTTTTCAGCATCTATTTTCTCTGGAGTTCGTCTGATAGCTGTTGGACGACTGAAACAAAGCCTTTGAATTCACTCGGCCGCAAAACTGAAGCCTTACTCCAGCATTATAATGTCAGCAAACATCACCTCCTGGTTCTAACTTCCTTATTTGCCAAACCAGATCAGATGGTGTCGTTCGAATGTAGCAAAGGCTCGAGATCTGACAGGCAGATCAAAAATGGGATTTCTTGTGATTTGAAGTTACTATCATCCGAGGAGGTTCATGTACAACAGCATCGATCAATAGAAGAACAACAGGTAGAATCACATGATCAATGCCCAGCTCACTATGAGAAGATCCCGAGTTACTTTGATCTATCTTTCTCTCTGGACAAGAGTGTATTAGCTTCACATTCGTCAATGTCGTCTAAACCTACTAACAGTATTCACCCTTTTGGAAAGAAAATATTTGGTGAATATACCGAAAGAACTGCTTTCGAGAGACCTTTAACCAGCGGTGTTGCGTATGCTCTAAAAGTTAATCACTCGGAAAGAGATCTGTTTGAGAAAAAGCATGGGTGGACCATAAAGAAAATGGAAACCGAGGACCAGACTCTGGTTCGAGATTGTATCCCTGAAAATTTGGACCCTGCACCTATTCAAGACGAATACGCTCCTGTCATATTTTCCCAAGAAACTGTCTCCCATATTGTCTCTATTGACATGATGTCTGGAAAGGAAGATCGTGATAACATATTACGGGCCAGAGCATCGGGAAAGGGAGTACTTACATCGCCTTTTAAACTATTGAAATCCAATTATCTTGGTGTTGTTCTAACGTTTGCTGTCTATAATAAGGACCTCCCACCTAATGCTACATCAGATCAACGCGTTGAAGCTACTGCCGGGTATCTCGGGGCATCTTATGATGTGCCATCATTGGTGGAGAAGCTTCTGCACCAGCTTGCCAGCAAACAAACCATAGTTGTAAATGTGTATGATATGACAAACGATTCTTCTCCCATAAAGATGTATGGTTCTGATTTCAACGATACAGGGCTACTTCATGTAAGTAACCTTGATTTTGGTGATCCACAAAGGAAGCACGAGATGCACTGTAGCTTCAAGCAAAAACCAACTCTTCCTTGGACGGCCATAAATGCATCGGTGGCAGTCCTGGTCATTACTCTCCTCGTCGGGCATATATTTCATGCTGCCATTTGTCAAATTCAAGAAGTTGAGAATGATTATCGTGAGATGACGGAGCTCAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCCCAGTTTCTTGCAACTGTTTCCCATGAGATCAGGACACCAATGAATGGCGTGTTAGGCATGCTGAAATTGCTGATGGATACCAACCTTAATGAAGAACAACTGGACTATGCTTGTACAGCCCATGACAGTGGAGAAAGCCTAATATCTCTCATAAATGAGGTCCTTGATCAGGCTAAGATAGAATCAGGCAGGCTTGAGCTTGAATCTGTAACTTTCGATCTTCGTGCAGTGCTTGACAATGTTCTCTCGCTCTTTTCTGGAAAATCAAATGAAAAAAGGATTGAGCTGGCTGTTTATGTCTCTCCTTTGGTACCTGAATTTGTGATCGGTGACCCTGGTCGATTCAGGCAGATAATTACAAATGTTGTTGGAAATTCTATCAAGTTTACTCATAACAAAGGACATATCTTCATCTCAGTGCATCTGGCAGATGAAGTCTTGGGTCCACTTAATGATATGGATAAAGTTCTGAGACAAGGGTTGAGCTCAGTCAAAGAAATATCGAGCACTACCCTTAATACGCTAAGCGGGTTTCCTGTTGTGAATAGATGGAAAAGCTGGAAACTTTTCAAGAATCTTTGCAGGACAGATGCAATGCAGCCTTCAGAAATGATCAAATTGTTAGTTACCGTCGAGGATACTGGTGTGGGGATTGCTCTAAACGCTCAAAGCCGAATCTTCACACCTTTCATGCAGGCCGATAGTTCCACTTCAAGGACTTATGGTGGGACTGGAATAGGATTAAGCATTTGCAAATGTCTTGTGGATCTCATGGATGGGGAGATTGGTTTTGTTAGCGAACCAGGAATCGGAAGTACATTTTCATTTACGGGTTCTTTGAAAAAAGGGGAAAGTGATTCACTTGAAGCAAAAAGGCAGCAGCACGATCCAATCGTGACAGATTTCAGAGGGTTGAAAGCTTTAATAATAGATAACAGCAGTATACGCGGTGAGGTTACGAAATATCATCTTTATAGATTGGGGATCTCCGTCGATATTGCTTCGAGTCTCGGATGCATCTACCCATATCTGTCTAATACTGGCAGCAACAGTGTGTCAAGCGATTTGGGAATGATACTTATTGACAAAGATGTATGGGACAAAGAAGGGGGGCTGAATTTCCATCAACGCCTAAAAGAGCGCATAAAAAACGGCATCGACAAAGTCCAGAAAAGCATCCCAAAAATTTTTCTCTTAGCTACATTCATCAATCCGAATGAGCGGAACAAGCTCAGCTCAGCGGGGCTTCTAAACAACGTAATTATGAAACCTTTACGGTTAAGTGTTGTAATTGGTTGCTTCCAAGAGGCTTTGGGAGGTGGTAAGAAGAGACACATTAGTAGAAAGAAACCAGCTACTCTTGGGACCCTGCTCAGAGGAAAGAATATTTTGGTGGTGGATGACAATGTGGTTAACAGAAGAGTGGCCGAAGGTGGTCTGAAGAAATATGGAGCGGTTGTTACCTGTGTGGAAAGCGGCCGGGAAGCTATCTCTCTGCTTAAACCGCCACACCAGTTCGATGCATGTTTTATGGATATTCAGATGCCAGAGATGGATGGGTACTTTGAAGCGACAAGGCAAATACGAGAATTAGAAGGAGAGGTCAACGAGAAAAATGCCTCTGGAGATGCATCATTTGGGGATATGGTCCATTGGCACATACCAATATTGGCCATGACTGCCGATGTAGTTCAAGCTTCGAATGAAAAGTGTATGAAGTGCGGGATGAATGATTATGTATCAAAGCCGTTTGGAGAAGAACAACTTTATTCCGCCGTCTCACGCTTCTTTGAATCTGGCTGA 3237 42.76 MAQNCKFSVSGGEVSTGLRLKKAKEDRNGPCSVIKLQRRILLLFVVGLVLLFSIYFLWSSSDSCWTTETKPLNSLGRKTEALLQHYNVSKHHLLVLTSLFAKPDQMVSFECSKGSRSDRQIKNGISCDLKLLSSEEVHVQQHRSIEEQQVESHDQCPAHYEKIPSYFDLSFSLDKSVLASHSSMSSKPTNSIHPFGKKIFGEYTERTAFERPLTSGVAYALKVNHSERDLFEKKHGWTIKKMETEDQTLVRDCIPENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRDNILRARASGKGVLTSPFKLLKSNYLGVVLTFAVYNKDLPPNATSDQRVEATAGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDMTNDSSPIKMYGSDFNDTGLLHVSNLDFGDPQRKHEMHCSFKQKPTLPWTAINASVAVLVITLLVGHIFHAAICQIQEVENDYREMTELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLNEEQLDYACTAHDSGESLISLINEVLDQAKIESGRLELESVTFDLRAVLDNVLSLFSGKSNEKRIELAVYVSPLVPEFVIGDPGRFRQIITNVVGNSIKFTHNKGHIFISVHLADEVLGPLNDMDKVLRQGLSSVKEISSTTLNTLSGFPVVNRWKSWKLFKNLCRTDAMQPSEMIKLLVTVEDTGVGIALNAQSRIFTPFMQADSSTSRTYGGTGIGLSICKCLVDLMDGEIGFVSEPGIGSTFSFTGSLKKGESDSLEAKRQQHDPIVTDFRGLKALIIDNSSIRGEVTKYHLYRLGISVDIASSLGCIYPYLSNTGSNSVSSDLGMILIDKDVWDKEGGLNFHQRLKERIKNGIDKVQKSIPKIFLLATFINPNERNKLSSAGLLNNVIMKPLRLSVVIGCFQEALGGGKKRHISRKKPATLGTLLRGKNILVVDDNVVNRRVAEGGLKKYGAVVTCVESGREAISLLKPPHQFDACFMDIQMPEMDGYFEATRQIRELEGEVNEKNASGDASFGDMVHWHIPILAMTADVVQASNEKCMKCGMNDYVSKPFGEEQLYSAVSRFFESG 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6342596 6348803 + Bda023671.1 Bda06g00425 8007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00425 1078 CDD HATPase_EvgS-ArcB-TorS-like 593 755 - -
Bda06g00425 1078 PRINTS Bacterial sensor protein C-terminal signature 685 699 IPR004358 GO:0016310|GO:0016772
Bda06g00425 1078 PRINTS Bacterial sensor protein C-terminal signature 720 738 IPR004358 GO:0016310|GO:0016772
Bda06g00425 1078 PRINTS Bacterial sensor protein C-terminal signature 703 713 IPR004358 GO:0016310|GO:0016772
Bda06g00425 1078 PRINTS Bacterial sensor protein C-terminal signature 744 757 IPR004358 GO:0016310|GO:0016772
Bda06g00425 1078 SUPERFAMILY CheY-like 936 1075 IPR011006 -
Bda06g00425 1078 SMART CHASE_2 200 390 IPR006189 -
Bda06g00425 1078 Gene3D - 446 539 - -
Bda06g00425 1078 CDD HisKA 476 537 IPR003661 GO:0000155|GO:0007165
Bda06g00425 1078 PANTHER TWO-COMPONENT HISTIDINE KINASE 38 1077 - -
Bda06g00425 1078 Pfam Response regulator receiver domain 941 1071 IPR001789 GO:0000160
Bda06g00425 1078 ProSiteProfiles Response regulatory domain profile. 784 916 IPR001789 GO:0000160
Bda06g00425 1078 ProSiteProfiles Histidine kinase domain profile. 483 760 IPR005467 -
Bda06g00425 1078 ProSiteProfiles CHASE domain profile. 191 415 IPR006189 -
Bda06g00425 1078 SMART HisKA_10 476 541 IPR003661 GO:0000155|GO:0007165
Bda06g00425 1078 Coils Coil 999 1019 - -
Bda06g00425 1078 Coils Coil 453 473 - -
Bda06g00425 1078 ProSiteProfiles Response regulatory domain profile. 940 1075 IPR001789 GO:0000160
Bda06g00425 1078 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 588 755 IPR003594 -
Bda06g00425 1078 Gene3D - 540 762 IPR036890 -
Bda06g00425 1078 PANTHER HISTIDINE KINASE 2 38 1077 - -
Bda06g00425 1078 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 462 542 IPR036097 GO:0000155|GO:0007165
Bda06g00425 1078 SMART REC_2 939 1071 IPR001789 GO:0000160
Bda06g00425 1078 CDD REC_hyHK_CKI1_RcsC-like 941 1071 - -
Bda06g00425 1078 Pfam CHASE domain 200 388 IPR006189 -
Bda06g00425 1078 Gene3D - 934 1077 - -
Bda06g00425 1078 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 530 755 IPR036890 -
Bda06g00425 1078 Pfam His Kinase A (phospho-acceptor) domain 476 541 IPR003661 GO:0000155|GO:0007165
Bda06g00425 1078 Gene3D CHASE domain 197 422 IPR042240 -
Bda06g00425 1078 SMART HKATPase_4 588 760 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00425 Bda-Chr6:6342596 Bda08g00185 Bda-Chr8:1682902 0 dispersed
Bda13g00598 Bda-Chr13:6969439 Bda06g00425 Bda-Chr6:6342596 6.37E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16006 PF03924 CHASE 4.00E-31 CL0165 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00425 K14489 - zju:107407657 1315.83