Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00438 ATGGAGAAGCTAGCACTGAATCGGAGTTCGGATTTTTCGCTGAATAGTGGAGATGATCGGAGCGATTCGGTGAAGAAAATGATGGAGGTGATAGAGACTGTGGGGAAATACTGTTCGTATCGGAGAACTCAGAGGAAGGAGAGCTTAAACTTAGTGAGGAGGTTGAAGCTCTTGGTTCCGCTTTTGGAGGAGATGAGAGAGCTTGATTCCACTCTCAAGTCCGCTCAAGCATTGAATCGTCTTGCTAATTTGAAGAACGCTCTTCTTTTGGCCAAGAAGCTGTTGAAGGATTGTAACTATGGAAGCAAGATTTACTTGGCATTGGAAAATGAGGCCGTGATGGGAAGATTTCATGCTGTTTATGACAAATTAAACGAAGCCTTGGATCAGATGCCTTACAATGAGCTCGGAATCTCAGATGAAGTGAAAGAGCAAGTGGAGCTAATGCGTATGCAACTCAAAAGAGCAAAGCGAAGGGTAGATACACAAGACATAGAGCTAGCCATGGATATGATGATTGTATTCTCAAAAGAGGATGACAGAAATGTTGATAGCGTGATAATACAAAGATTGGCTTATAAGTTGGAGCTTTACACCATTGCAGACATGAAGGCAGAAACAGAAGCCGTCAAAAAGCTTGCTAAAGTGAGAAGAGGGCAGAATTCTGAGAGTATCCAGCAAATTTTAGATCTTTTAGGAAAATTCAAACAGATTGCAGGAATTGACCAGAGCACTGGTCTTGACGGGCCCGTCTCGGTTAAATGTTTGCAGCGGTGTGGTTCGTCGTTGATTCCTAATGAATTTCTCTGCCCAATTACGTTAGAGATCATGACAGATCCTGTTATTGTGGCAACTGGACAGACTTACGAACGAGAAAGTATACAAAAGTGGCTGAGATCAAATCATCAGACCTGTCCGAAGACTGGACAAACCTTGGATCACTTGTTGATAGCACCGAATTACGCCCTTAAGAACCTCATCCAGCAGTGGTGTGAAAAGAACAACATCGAGCTTCCTCGAAAGGAACCGGTTGGATCAAACGGATGTCTAGCTGAACTTATAGATGAAATCTCATCCTTAGTTCATAATCTGTTATCTTCTGACACTGATGTTCAGAGAGAGGCGATCATGAAGATCCGAATTCTCTCGAAAGAGAACCCACAAAACAGAATTCTAATTGCAAACAGCGGAGGAATCGCTCCTCTGGTTCACTTATTGTCTCATCCAGATCCGAGGTTTCAAGAACATACTGTAACAGCACTCTTGAACTTGTCGATCGACGAAGAAAATAAAAGAATCATCGCAAGAGAAGGAGCTATTCCCGCCATTATCGAAATCCTTGGAAATGGAACGGATGAAGCTAAAGAGAATTCAGCTGCTGCTTTGTGCAGTCTATCAATGCTTGATGAGAACAAAGTACTGGTAGGAGCTTTAAATGGAATACCTCCATTGGTAAACCTTCTGAAAAATGGGACAACAAGAGGTAAGAAAGATGCAGCCACTGCATTGTTTAACTTGCTATTGAACCAAGCCAACAAGTCTAGAGCAATAAAGGCAGATATAATTACTCCATTGCTGAATCTACTCGAAGATAGAGTCTTGGGAATGATCGATGAAGCGCTCTCGGTCTTACTACTTCTCATATCACATCCTCATGGCCGGAGCGAGATTGGGAAGCTCTCCTTCATCGAAACTTTAGTCGATATTACAAAAAATGGGACTGCGAAGAACAAAGAATGTGCCGTGTCAGTTCTCCTAGAGCTAGGATTGAAAAATTCAACTTTCATTTTGGCTGCACTTCAATATGGTGCGTATGATCCTCTGGTAGAATTATCGAGAAGTGGGACGAACCGAGCGCAGAGAAAGGCCAGCTCGCTTCTGCTGGAAATGAGTAAGGGCGAACACATTCCGTGA 1914 42.95 MEKLALNRSSDFSLNSGDDRSDSVKKMMEVIETVGKYCSYRRTQRKESLNLVRRLKLLVPLLEEMRELDSTLKSAQALNRLANLKNALLLAKKLLKDCNYGSKIYLALENEAVMGRFHAVYDKLNEALDQMPYNELGISDEVKEQVELMRMQLKRAKRRVDTQDIELAMDMMIVFSKEDDRNVDSVIIQRLAYKLELYTIADMKAETEAVKKLAKVRRGQNSESIQQILDLLGKFKQIAGIDQSTGLDGPVSVKCLQRCGSSLIPNEFLCPITLEIMTDPVIVATGQTYERESIQKWLRSNHQTCPKTGQTLDHLLIAPNYALKNLIQQWCEKNNIELPRKEPVGSNGCLAELIDEISSLVHNLLSSDTDVQREAIMKIRILSKENPQNRILIANSGGIAPLVHLLSHPDPRFQEHTVTALLNLSIDEENKRIIAREGAIPAIIEILGNGTDEAKENSAAALCSLSMLDENKVLVGALNGIPPLVNLLKNGTTRGKKDAATALFNLLLNQANKSRAIKADIITPLLNLLEDRVLGMIDEALSVLLLLISHPHGRSEIGKLSFIETLVDITKNGTAKNKECAVSVLLELGLKNSTFILAALQYGAYDPLVELSRSGTNRAQRKASSLLLEMSKGEHIP 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6458074 6460521 + Bda023683.1 Bda06g00438 8020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00438 637 Pfam U-box domain 264 335 IPR003613 GO:0004842|GO:0016567
Bda06g00438 637 Gene3D - 19 133 IPR036537 GO:0007166
Bda06g00438 637 Pfam Armadillo/beta-catenin-like repeat 469 506 IPR000225 GO:0005515
Bda06g00438 637 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515
Bda06g00438 637 SUPERFAMILY RING/U-box 264 338 - -
Bda06g00438 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 479 521 IPR000225 GO:0005515
Bda06g00438 637 SMART arm_5 427 467 IPR000225 GO:0005515
Bda06g00438 637 SMART arm_5 468 508 IPR000225 GO:0005515
Bda06g00438 637 SMART arm_5 386 426 IPR000225 GO:0005515
Bda06g00438 637 SMART arm_5 592 632 IPR000225 GO:0005515
Bda06g00438 637 SMART arm_5 346 384 IPR000225 GO:0005515
Bda06g00438 637 SMART arm_5 509 549 IPR000225 GO:0005515
Bda06g00438 637 Coils Coil 139 159 - -
Bda06g00438 637 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 19 632 - -
Bda06g00438 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Bda06g00438 637 CDD RING-Ubox_PUB 268 310 IPR045210 -
Bda06g00438 637 PANTHER U BOX DOMAIN-CONTAINING 19 632 - -
Bda06g00438 637 MobiDBLite consensus disorder prediction 1 21 - -
Bda06g00438 637 SMART Ubox_2 267 330 IPR003613 GO:0004842|GO:0016567
Bda06g00438 637 SUPERFAMILY ARM repeat 357 633 IPR016024 -
Bda06g00438 637 Gene3D - 496 635 IPR011989 -
Bda06g00438 637 ProSiteProfiles U-box domain profile. 263 337 IPR003613 GO:0004842|GO:0016567
Bda06g00438 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 338 IPR013083 -
Bda06g00438 637 Gene3D - 346 494 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00859 Bda-Chr2:49047415 Bda06g00438 Bda-Chr6:6458074 1.88E-17 dispersed
Bda06g00438 Bda-Chr6:6458074 Bda07g00590 Bda-Chr7:7230889 8.00E-164 dispersed
Bda06g00438 Bda-Chr6:6458074 Bda01g01561 Bda-Chr1:51500294 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00438 - - tcc:18607402 878.626