Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00439 ATGAACTCCAATCTCAACTCCGCCGCCGCCGGTTTCACCTCCCATTTCCCCTTTAACGCTGTCTCCGGGACCGACTTCGATGGTGGGGCTTCTTTGGAAGCTCTTACTGCTCCTGGTTTCAAACGCCGCCACCAGAATCCTCGGCGGAAGCGGTCAAAAATGGTCAGAATCGACGATGATCCGGCGGCTGTTTCCAGTTCTAGCAGCTTTTCGAAGCCGAAATACGTGAAAAAACCAGACCCAAATGCACCTAAAATAACCCGACCTTGTACCGAATGTGGGAAAAGGTTTTGGTCATGGAAAGCGCTTTTTGGCCACATGAGGTGCCATCCTGAACGCCAGTGGCGAGGTATAAACCCACCGCCGAATCTCCGTTCACCTAATGTCTTCTCCGTCAGCGATTTCGAGTCGGAAATGACAGAAGAAGATAATGAGGTCGCAGAATGTTTGATTATGCTAGCAACTACCCCAACCCCCATTGACGATCGAACTCAAAGCTTTACTTCCACAAGCTATGGAGAATTTCATCCTTCTGATAGTTTCCCGGTAGACGAACCGCCAGTGATCAGAGACGCCGAATGCGCAGGTCCGTCCTGGCGATCGTTCGAGTGCTCGAGTTGCAAGAAAGTGTTTGGGTCCCACCAGGCGCTTGGCGGCCATAGAGCGACTCACAAGAACGTGAAAGGCTGCTTCGCCATTACGAGAAACGGTTCAGAGGCTGAAGACGATCAGGTGGGAGAGCGAGAAAGGGAGAGTAACGCGGAGGAGAAGACGGCGATGGTATTGGGCGGCGCAGAAGGACACAGGTGCAGCATTTGCATGAGGGTTTTCTCAAGCGGACAAGCTCTAGGTGGGCACAAGAGGTGCCACTGGGAGAAAGGGGAGGATCAGCCATTGCTGAGCCCTTATGTTTCTTCTTCAGCAAGGGAAGGTTTTAATAATCTGGACTTGAATTTGCCTCCGCCATTGGAGGAAGATTACTCCTCCTCTTCATATTCTTCCAACCTCACTCTAGATCTAAGGTTGACTCTTTGA 1035 51.4 MNSNLNSAAAGFTSHFPFNAVSGTDFDGGASLEALTAPGFKRRHQNPRRKRSKMVRIDDDPAAVSSSSSFSKPKYVKKPDPNAPKITRPCTECGKRFWSWKALFGHMRCHPERQWRGINPPPNLRSPNVFSVSDFESEMTEEDNEVAECLIMLATTPTPIDDRTQSFTSTSYGEFHPSDSFPVDEPPVIRDAECAGPSWRSFECSSCKKVFGSHQALGGHRATHKNVKGCFAITRNGSEAEDDQVGERERESNAEEKTAMVLGGAEGHRCSICMRVFSSGQALGGHKRCHWEKGEDQPLLSPYVSSSAREGFNNLDLNLPPPLEEDYSSSSYSSNLTLDLRLTL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6461659 6462693 + Bda023684.1 Bda06g00439 8021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00439 344 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 37 344 - -
Bda06g00439 344 SMART c2h2final6 202 224 IPR013087 -
Bda06g00439 344 SMART c2h2final6 88 110 IPR013087 -
Bda06g00439 344 SMART c2h2final6 268 290 IPR013087 -
Bda06g00439 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 229 IPR013087 -
Bda06g00439 344 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 37 344 - -
Bda06g00439 344 MobiDBLite consensus disorder prediction 37 84 - -
Bda06g00439 344 Gene3D Classic Zinc Finger 200 290 - -
Bda06g00439 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 295 IPR013087 -
Bda06g00439 344 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Bda06g00439 344 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Bda06g00439 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Bda06g00439 344 ProSitePatterns Zinc finger C2H2 type domain signature. 270 290 IPR013087 -
Bda06g00439 344 SUPERFAMILY beta-beta-alpha zinc fingers 89 224 IPR036236 -
Bda06g00439 344 Pfam C2H2-type zinc finger 89 112 - -
Bda06g00439 344 Pfam C2H2-type zinc finger 268 292 - -
Bda06g00439 344 Pfam C2H2-type zinc finger 202 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00439 Bda-Chr6:6461659 Bda11g00425 Bda-Chr11:4511861 9.39E-33 dispersed
Bda05g00657 Bda-Chr5:54793877 Bda06g00439 Bda-Chr6:6461659 8.06E-08 transposed
Bda13g00614 Bda-Chr13:7191697 Bda06g00439 Bda-Chr6:6461659 1.30E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16007 PF13912 zf-C2H2_6 6.50E-11 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00439 - - jre:108997351 315.464