Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00441 ATGAAGAAAGCCGGTACCCCTACAACAGACTTCTCGGTGTTCCCTTCTGTCTTCAAGGCTTTTTCAAATCTGTCTCTTAAACACGGTGAGTATCTCCATGGTTATTTCATCAAACAAGGGCTTGATTCAGTCACTTCCATTTCTAATTCAGCTATAGATTTCTACATGAAATGGGGCGATTTGGGTTCTGCGCGCACTCTTTTCGATTGCTTGGAAAACAGAGATTCCATCTCTTGGAACATAATGGTTCATGGAAATCTTAATTACAGTTCTTTGGAAGAAGGATTGCAATGGTTTAAGAAAGGACGAAACGCTTGCTTTCTCCCCAATACTTCCACTATGGTGCTCGTAATTCGAGCATGTCGTAAGCTGGAAGCTTATCTCGAAGGATTAGAATTCCATGGCTACGTGATTCGATGCGGGTTTTGGGATATTCCTTCGGTTCAAAACTCATTGTTAGCTTTTTATGCAGATACCAACATTGATTGGGCTCATAACCTGTTCGACGAAATGCCTGAAAGAGATGTCATATCTTGGAGCGTTATGATTGGAGGGTATGCTCTAAATGACAAAGCCCATGCTGGCTTGCACGTGTTCAAAACGATGTTATCCAAGGCTGAACCAGATGGGGTGACTATGGTAAGTGCCATTAAAGCATGCGCTAATTTAGAAGATATAAAACTGGGATTGATGATGCATGGTTTGGTGATTGTTAGAGGCTTGGCATTTGATCTGTTTATAGGAAACTCATTGATAGATATGTATTCCAGGTGTTATGACCCAAAATCCGCATTTGAAGTTTTCAACGAGATGCCACAGAAAAACATCGTCTCGTTGAATTCGATGTTATCGGCATGTGTCCTCAACGAAAAGCATTGGGAAGCTCTATCGTTATTATATTCGATGGAGACGGCAGGAATCGAGGCAGATGAGATTACGCTCGTGAATATTCTTCAATTATGCAAGCATTTCACTCAGCCATTGCAATGTAAAGCGGTCCACTGTATAATGATACAGAAGGAAGTCGAAACAAACGAACTTTTGGTTAATTCTCTGATGGATGCGTATGCAAAATGCTATCTCGTTAGTCTTGCATATAGACTCTTTGAAAGGATGAGTCGAAAAGATGTGGTGTCTTGGAGTACGATGATTTCTGGGTTCACCCATTGCGGCAATCCTTATCAAGCAATGGCTACGTTCAAGGAAATGAATCGGGCAGAAGTGAAGCCGAATGAGATAACCATGATCAACCTTCTCGAGACATGTGCACTTTCCGCAGAATTGAAAAGGTCGAAGTGGGCCCACGGGGCCACTCTCAAGAGGTGTGGTGGATCCGAGGTAACCGTCGGAACTGCCATTATCGACATGTACTCAAAATGTGGGGATATAGTATCCTCGAGACGGGTTTTTGACCAAATCAGCAGGAAAAATGTCGTGTCGTGGAGTGCGATGATGAGAGCATATGGAATGAACGGTCGTGGGTCCAAAGTTGTGGATTTGCTGTCGGAAATGAAACGAAATGGTGTCAAGCCGAATTCTGCCACTGCTTTATCATTTCTATCAGCTTGCAATCACGCAGGATTGGTCGAAGAGGGGATTTCCTTTTTCATGTCCATGACTACAGAATATGAGATCGTACCGGACCGGGAGCATTACTCGTGTGCAGTGGACATGTTATGTCGAGCCGGAAAGTTAGAAAGTGCAGTGGAATTGATTAAGAGACTGCCTGAAGGAATGGAGGGCAGTGCAGGTTTATGGGGAGCAGTCCTGTGCTCTTGCAGAAACCAAGCAAAGAGTGATCTGGACTCGGAAGCCATCGATCGAGTGCTTCGGCTGGAGCCTCGTAGCTCATTTGGCTACATGATTGGCTCGAGCTTGTATGCCGCCAATGGGTCGAAGAAGGATTCCGCAAAGATGAGAAAGATGGCGAGAGAGCGGGGAGTGAAGGTTTCTGCTGGGTATAGTTTGGTTCATGTGGATGATATGGCTTACAGGTTCATTGCTGGAGATGGGTCTCACCCAGAAACAGGTAAGATATACTCCATGGTTAGCCAATTGCATGATATGATGAAGATGGATTTGATTACCAATGTTATTATTAATTGA 2106 43.97 MKKAGTPTTDFSVFPSVFKAFSNLSLKHGEYLHGYFIKQGLDSVTSISNSAIDFYMKWGDLGSARTLFDCLENRDSISWNIMVHGNLNYSSLEEGLQWFKKGRNACFLPNTSTMVLVIRACRKLEAYLEGLEFHGYVIRCGFWDIPSVQNSLLAFYADTNIDWAHNLFDEMPERDVISWSVMIGGYALNDKAHAGLHVFKTMLSKAEPDGVTMVSAIKACANLEDIKLGLMMHGLVIVRGLAFDLFIGNSLIDMYSRCYDPKSAFEVFNEMPQKNIVSLNSMLSACVLNEKHWEALSLLYSMETAGIEADEITLVNILQLCKHFTQPLQCKAVHCIMIQKEVETNELLVNSLMDAYAKCYLVSLAYRLFERMSRKDVVSWSTMISGFTHCGNPYQAMATFKEMNRAEVKPNEITMINLLETCALSAELKRSKWAHGATLKRCGGSEVTVGTAIIDMYSKCGDIVSSRRVFDQISRKNVVSWSAMMRAYGMNGRGSKVVDLLSEMKRNGVKPNSATALSFLSACNHAGLVEEGISFFMSMTTEYEIVPDREHYSCAVDMLCRAGKLESAVELIKRLPEGMEGSAGLWGAVLCSCRNQAKSDLDSEAIDRVLRLEPRSSFGYMIGSSLYAANGSKKDSAKMRKMARERGVKVSAGYSLVHVDDMAYRFIAGDGSHPETGKIYSMVSQLHDMMKMDLITNVIIN 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6509817 6511922 - Bda023686.1 Bda06g00441 8023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00441 701 TIGRFAM PPR: pentatricopeptide repeat domain 249 277 IPR002885 -
Bda06g00441 701 TIGRFAM PPR: pentatricopeptide repeat domain 378 412 IPR002885 -
Bda06g00441 701 TIGRFAM PPR: pentatricopeptide repeat domain 479 513 IPR002885 -
Bda06g00441 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Bda06g00441 701 Gene3D Tetratricopeptide repeat domain 328 435 IPR011990 GO:0005515
Bda06g00441 701 Gene3D Tetratricopeptide repeat domain 144 228 IPR011990 GO:0005515
Bda06g00441 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Bda06g00441 701 Pfam PPR repeat 551 575 IPR002885 -
Bda06g00441 701 Pfam PPR repeat 277 307 IPR002885 -
Bda06g00441 701 Pfam PPR repeat 249 276 IPR002885 -
Bda06g00441 701 Pfam PPR repeat 177 205 IPR002885 -
Bda06g00441 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Bda06g00441 701 Pfam PPR repeat family 375 422 IPR002885 -
Bda06g00441 701 Pfam PPR repeat family 476 523 IPR002885 -
Bda06g00441 701 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 206 670 - -
Bda06g00441 701 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 107 423 - -
Bda06g00441 701 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 323 - -
Bda06g00441 701 Gene3D Tetratricopeptide repeat domain 229 327 IPR011990 GO:0005515
Bda06g00441 701 Gene3D Tetratricopeptide repeat domain 446 664 IPR011990 GO:0005515
Bda06g00441 701 Gene3D Tetratricopeptide repeat domain 1 143 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00441 - - - qsu:112025233 821.231
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00441 Bda08g00947 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00441 Bda-Chr6:6509817 Bda01g00841 Bda-Chr1:40416139 6.23E-22 dispersed
Bda06g00441 Bda-Chr6:6509817 Bda11g00292 Bda-Chr11:3318132 8.76E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g287 . Blo15g00712 Bda06g00441 Bda08g00947 Bpe07g00674 . . Bma12g00880 . . Cma02g00298 Cma20g00716 Car02g00178 Car20g00615 . . . . . . . . . . . . . . . . . . . . Cone10ag1214 Lsi10g00829 . . . . . . . . . . . . Cmo02g00293 . . . . . . Cpe05g01338 . . . . . . . . . . . . . . . . . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013720 1 2 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00441 Bda_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0