Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00450 CCAATGGGTGTCCTAAAAACTACATTTCTGTGTTTGATTTTACTGCACACCCGCTTCACCTCTGCAGTCGACGACGAAGAATGGAAAACTGCTACTGCAACATATGCCAAAGAAACAGATGGCTCCATCATTACAGAAGGTGCTTGTGGTTATGGGGATCTTCACAGGATTAGCTACGGAAAGCACAGTGCTGGATTGAGTGGCATTCTGTTCAACAGAGGGGGTACTTGTGGGGCTTGTTATGAGCTTAGATGTGTTGACCACATTTTATGGTGTCTGCAAGGAAGCCCTTCTGTGATTCTCACTGCTACAGATTTCTGCCCTCCAAATTACGGGATGTCGTCCGACTATGGCGGCTGGTGTAATTTCCCCAATGAACACTTTGAAATGTCTGAGGCTGCTTTTTCTCAAATTGCAGAGAAGATAGCTGACCTTGTACCTGTTCAGTATAGAAGGGTAAAGTGCGACAGAAACGGCGGGGTTAGCTTCATGGTGAATGGAAATTCTCATTTCTGTCAAGTTTTGATCACAAATGTTGGGGATGACGGTGAAGTTGTGGGGGTGAAGTTGAAGGGATCAAGAACAGGGTGGATACCCATGGCTAGAAATTGGGGACAGAATTGGCAAAGCAATGCCAATCTTAAAGGGCAGCCTCTGTCTTTTGAGGTGACTACAAGCAATGGGAAGACATTGACTTCATACAATGTAGCTCCACCAAACTGGCAGTTTGGTCAGACTTATGAAGGTAAACAATTCTAA 759 45.06 PMGVLKTTFLCLILLHTRFTSAVDDEEWKTATATYAKETDGSIITEGACGYGDLHRISYGKHSAGLSGILFNRGGTCGACYELRCVDHILWCLQGSPSVILTATDFCPPNYGMSSDYGGWCNFPNEHFEMSEAAFSQIAEKIADLVPVQYRRVKCDRNGGVSFMVNGNSHFCQVLITNVGDDGEVVGVKLKGSRTGWIPMARNWGQNWQSNANLKGQPLSFEVTTSNGKTLTSYNVAPPNWQFGQTYEGKQF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6546181 6547339 + Bda023694.1 Bda06g00450 8032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00450 252 SMART dpbb_1 63 150 IPR007112 -
Bda06g00450 252 PANTHER EXPANSIN-A15 4 252 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Bda06g00450 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Bda06g00450 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Bda06g00450 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Bda06g00450 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Bda06g00450 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Bda06g00450 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Bda06g00450 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Bda06g00450 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Bda06g00450 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Bda06g00450 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Bda06g00450 252 Gene3D - 157 252 IPR036749 -
Bda06g00450 252 SUPERFAMILY Barwin-like endoglucanases 27 178 IPR036908 -
Bda06g00450 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Bda06g00450 252 PANTHER EXPANSIN-A20 4 252 - -
Bda06g00450 252 Gene3D - 15 156 IPR036908 -
Bda06g00450 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00450 Bda-Chr6:6546181 Bda12g00322 Bda-Chr12:3555801 4.98E-94 dispersed
Bda08g01078 Bda-Chr8:23613070 Bda06g00450 Bda-Chr6:6546181 2.80E-21 dispersed
Bda06g00450 Bda-Chr6:6546181 Bda11g01211 Bda-Chr11:12476870 7.11E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00450 - - fve:101307261 436.032