Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00455 ATGGAGTCACAATCAGATCTTCAGAAAGTAGCACTAGAATTGACGGATGCTTTGTCTACGCTTGAGCATACATTCGTCGTCTCCGATGCTACAAAACCAGATTGCCCGATAGTTTACGCCAGCAGTGGGTTTTTCACCATGACTGGCTATTCCTCAGACGAAATCATTGGAAGGAACTGTCGATTCCTTCAAGGAGCAGACACAGACCAAAATGAAGTTGACAAAATTCGAAATGCAGTGAGGAATGGAAAAAGCTACTGCGGCCGGCTCTTGAACTACAAGAAGAACGGTTCTCCTTTCTGGAATCTTCTCACTGTCACTCCAATTAAAGATGAAAATGGCAAAGTCATCAAATTCATCGGAATGCAGGTTGAGGTCAGCAAATACACAGAAGGCGTGATCGACAAGGCATTACGTCCAAATGGATTGCCCCAATCATTAATCCGCTATGATGCTCGACAGAAAGAGAAGGCTCTGAACTCAATTGAAGAAGTTCTCCAGACTGTTAAACACCCTCAATCTCTCACTCGAACTACCAGCCACAATTCTGTCTTCAAACGCCAAGAGTCTGCACAATCCAAATCTGATTATGCCGAAGCTATCACTACGCCAGGGAGACAAACTTATCAATTGGATCCTAAAGTTGATCTGTCTCATTCAGGCGCATACGGAGATTCGTCAAAGAAATTTGGATTATCGGTGCTATTTGTCACAAAGTCATACTTTCACAGGTTCAAAGGGAGGTCTATGAGCACAACAGGGAGGTGTGAACAAAAGACAACCATTGAACCAGTGATTTTGATGACTAAAGAAATAGAGCGCACTGACAGTTGGGATCATGATGAAAGAGAAAGGGATATTCGTCAAGGAATCGATTTGGCAACCACGTTGGAACGAATTGAGAAAAATTTTGTGATTGCAGATCCTAGAATTCCTGATAATCCAATTATATTTGCATCTGATAGCTTTCTCGAATTGACGGAATATACACGAGAAGAAGTCTTAGGAAGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGCCACTGTGTCACTGATAAGAGATGCTATCAGAGAACAGAAGGAAGTCACAGTTCAGTTAATCAACTATACAAAGACTGGTAAGAAGTTTTGGAATTTATTCCACTTGCAGCCCATGCTAGACCAAGAGGGTGAGTTGCAATACTTCATTGGTGTACAACTAGATGAAAGTGATGATTTGGAACCTCTGCGAAACCGTCTTTCAGAGAAAACAGAACAACAAAGTGTGATGTTGGTCAAAGCAACAGCAGAAAATGTGGACGAGGCTGTCCGTGAGCTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTGAACCTGTTTTCCCAAAACCTCACAAGAAGGACAATTGCTCTTGGTTAGCAATCAAAAAGATTACTCAACAAGGTGAAAAAATCGGACTACATCATTTTAAACCCATAAGACCACTGGGTAGTGGAGATACTGGGAGTGTTCACTTGGTGGAACTGGAAGGTTCAGGGGAACTTTATGCTATTAAAGTAATGGACAAGGCTGTAATGTTGAACAGGAACAAGGTTCATAGAGCATGCATTGAAAGAGAAATTATTTCTTATCTGGATCATCCTTTTCTTCCGACTCTGTATGCATCATTTCAGACTCCTACACACGTTTGTTTGGTAACAGACTTTTACGCTGGTGGAGAATTGTATGCATTGCTCGAAAAGCAACCATTGAAAATGTTCAAAGAGGAATCTGCAAGGTTTTATGTTGCTGAGGTTGTCATTGCATTGGAATATCTACACTGCTTAGGAATTATTTATCGGGATCTGAAGCCTGAAAATATTTTAGTTCAAAAGGAGGGTCATATTGTATTAACCGATTTTGATTTGTCATTTTTGACTTCCTCGAAGCCTCAGGTTATAAAGTTTCCCTCACAAAGCAAACGGAGGTCGAAGAAGAATCAACTGCCACCTGCATTTGTTGCAGAACCAGTATCGCACTCGAATTCATTTGTTGGAACGGAAGAGTACATTGCTCCTGAAATTATTACTGGTGCCGGCCACACGAGTGCTATTGATTGGTGGACTCTGGGTATATTATTTTATGAATTGCTCTATGGACGTTCACCATTTAGGGGAAAGAACAGGCAGAAGACTTTTGCCAACATAATGCACAAAGAACTAACCTTCCCGAGTAGTATTCCGGTAAGTCTTCAAGCAAGGCAGATGATAAATGCTTTGCTCCAAAGAGACCCAGCCGCTCGTTTAGGCTCAAAAACCGGTGCCAACGAAATCAAACAACATCCTTTTTTCCGTGAAATCAATTGGCCTCTAATCCGATGCATGACACCACCTCCGCTGGATGCTCCTCTCGAATTGATTGAAAAGGATCCAAATGCAAAGGATATAAAGTGGGAAGACGATGGTGTGCTTACAAGGTCAATGGATTTGGAGATTTTCTGA 2481 41.8 MESQSDLQKVALELTDALSTLEHTFVVSDATKPDCPIVYASSGFFTMTGYSSDEIIGRNCRFLQGADTDQNEVDKIRNAVRNGKSYCGRLLNYKKNGSPFWNLLTVTPIKDENGKVIKFIGMQVEVSKYTEGVIDKALRPNGLPQSLIRYDARQKEKALNSIEEVLQTVKHPQSLTRTTSHNSVFKRQESAQSKSDYAEAITTPGRQTYQLDPKVDLSHSGAYGDSSKKFGLSVLFVTKSYFHRFKGRSMSTTGRCEQKTTIEPVILMTKEIERTDSWDHDERERDIRQGIDLATTLERIEKNFVIADPRIPDNPIIFASDSFLELTEYTREEVLGRNCRFLQGPETDQATVSLIRDAIREQKEVTVQLINYTKTGKKFWNLFHLQPMLDQEGELQYFIGVQLDESDDLEPLRNRLSEKTEQQSVMLVKATAENVDEAVRELPDANLRPEDLWAIHSEPVFPKPHKKDNCSWLAIKKITQQGEKIGLHHFKPIRPLGSGDTGSVHLVELEGSGELYAIKVMDKAVMLNRNKVHRACIEREIISYLDHPFLPTLYASFQTPTHVCLVTDFYAGGELYALLEKQPLKMFKEESARFYVAEVVIALEYLHCLGIIYRDLKPENILVQKEGHIVLTDFDLSFLTSSKPQVIKFPSQSKRRSKKNQLPPAFVAEPVSHSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILFYELLYGRSPFRGKNRQKTFANIMHKELTFPSSIPVSLQARQMINALLQRDPAARLGSKTGANEIKQHPFFREINWPLIRCMTPPPLDAPLELIEKDPNAKDIKWEDDGVLTRSMDLEIF 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6582510 6590906 - Bda023699.1 Bda06g00455 8037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00455 826 TIGRFAM sensory_box: PAS domain S-box protein 314 404 IPR000014 -
Bda06g00455 826 TIGRFAM sensory_box: PAS domain S-box protein 36 127 IPR000014 -
Bda06g00455 826 Pfam PAS domain 312 405 IPR000014 -
Bda06g00455 826 Pfam PAS domain 31 127 IPR000014 -
Bda06g00455 826 Gene3D PAS domain 24 197 - -
Bda06g00455 826 CDD PAS 312 404 IPR000014 -
Bda06g00455 826 Pfam Protein kinase domain 492 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00455 826 SMART serkin_6 490 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00455 826 SMART pas_2 291 360 IPR000014 -
Bda06g00455 826 SMART pas_2 12 81 IPR000014 -
Bda06g00455 826 Gene3D Transferase(Phosphotransferase) domain 1 574 791 - -
Bda06g00455 826 SMART pac_2 366 408 IPR001610 -
Bda06g00455 826 SMART pac_2 87 129 IPR001610 -
Bda06g00455 826 SUPERFAMILY PYP-like sensor domain (PAS domain) 31 123 IPR035965 -
Bda06g00455 826 Gene3D Phosphorylase Kinase; domain 1 489 573 - -
Bda06g00455 826 SUPERFAMILY PYP-like sensor domain (PAS domain) 307 404 IPR035965 -
Bda06g00455 826 ProSitePatterns Protein kinases ATP-binding region signature. 496 519 IPR017441 GO:0005524
Bda06g00455 826 Gene3D PAS domain 278 442 - -
Bda06g00455 826 ProSiteProfiles PAC domain profile. 84 138 IPR000700 -
Bda06g00455 826 ProSiteProfiles Protein kinase domain profile. 490 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda06g00455 826 ProSiteProfiles PAC domain profile. 363 417 IPR000700 -
Bda06g00455 826 CDD STKc_phototropin_like 488 801 - -
Bda06g00455 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Bda06g00455 826 ProSiteProfiles PAS repeat profile. 289 362 IPR000014 -
Bda06g00455 826 PANTHER BNAA02G07840D PROTEIN 6 825 - -
Bda06g00455 826 ProSiteProfiles PAS repeat profile. 10 83 IPR000014 -
Bda06g00455 826 PANTHER FLIPPASE KINASE 1-RELATED 6 825 - -
Bda06g00455 826 SUPERFAMILY Protein kinase-like (PK-like) 468 803 IPR011009 -
Bda06g00455 826 CDD PAS 37 126 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00791 Bda-Chr2:48624228 Bda06g00455 Bda-Chr6:6582510 1.59E-27 dispersed
Bda06g00455 Bda-Chr6:6582510 Bda09g01486 Bda-Chr9:46684330 2.34E-27 dispersed
Bda13g00562 Bda-Chr13:6565897 Bda06g00455 Bda-Chr6:6582510 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69668 PF00069 Pkinase 8.70E-60 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00455 K20715 - jre:108997379 1278.46