Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda06g00458 | ATGTCTTTCATCAACTTCATTAATCTGGTACGGAAATATGGAAAGCAGATGGAATCATTAGATGCAAGGTCCAAATTTGACTTTGAAGACGAGAGCCTTAGTAGTCCTGCATCCATAGCTGCAAAGAAATATTCCTTTCAGGAGTCGTTACACATATCCTCATCTACTAGTAGTCCGCAGACCTTTTTCTCTCAAGACATGAGGAAAAGGGTAATTGATAGTATCAAAATCGTCGTCTTTTCCGCAAAAATCAACATTCTCATGCCTTTTGGGCCCCTGGCAATCTTGGTTTATAACTTATCTGGCCATCATGGATGGGTCTTCTTTTTAAGCTTATTAGGGATCATACCTCTGGCCGAGCGTTTGGGTTATGCAACTGAGCAGCTGGCCTGCTACACCGGAGCCACAGTTGGAGGTCTTCTTAATGCTACTTTTGGAAATGCAACGGAATTGATAATATCTATTTATGCATTGAAAAGGGGAATGATCCGTGTTGTTCAACAGTCATTACTTGGCTCTATTCTGTCAAACATGTTACTAGTGCTTGGATGTGCATTTTTTGCTGGTGGACTCGTGTTTTCAAAACGAGAACAAGAATTCACTAAGTCATCTGCTACGGTGAACTCTGGATTGCTGCTAATGGCAGTCATGGGTCTTTTATTTCCGGCAGTCCTTCATTCCACTCATACTGAACTCCATTTTGGAAAGTCTGAGTTGGCTCTTTCGAGGTTTAGCAGCTGCATCATGCTGGTAGCATACGCTGCCTATCTTTTTTTCCAGTTGAGGAATGATAAAAATCTCTATGTCCCAGTTGATGAGGTTGAGGTTCAGGCTGAAGAGAATTCTGACGATGAAGATGCACCTGAGATCTCTAAATGGGAATCGATAATTTGGTTGACTATTTTGACAGCATGGATTTCAGTCCTCTCAGAATATTTAGTAAATGCCATTGAGGGAGCATCAGTGGCAATGAAAATACCAGTGGCATTCATTAGTGTTATCCTGCTCCCAATTGTGGGGAATGCTGCCGAGCACGCAGGTGCTGTAATGTTCGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTTGCCATTGGATCCTCAACCCAGATATCTATGTTCGGGATTCCCTTTTGCGTCGTAATCGGTTGGGCCATGGGTCGTCCGATGGACTTAAATTTTCAACTTTTCGAGACAGCCACCCTTCTCATGACTGTCATAGTCGTAGCCTTCATGCTTCAGGACGGTACCTCGAATTACTTCAAAGGCCTAATGCTTATTCTTTGCTACCTAATAGTAGCAGCAAGCTTTTTTGTACATATAGATCCATCTTCAGTAGAAAAATGGTCAACACATGCGGAGCACGTGCGCGGAGGCGTTCACCCTCACACGACTCTCCGTGTTCGAACGGCGGGCGTTCACTCTCACATAGCCCTCTCGGGGCGAGGAGGAGGAAGAGATCGCTATCAGAAAGATAACTCCAGATTTGAAGAGCGGAGTAATTCGGGGCGTTCCAGCCACAGTAACCCTCCTTCTAGGCACCTTTGGGTGGGAAATCTATCTCACAGCATTGGAGAGCATGATCTCACCCGTCATTTTCTACAGTTTGGAGACCTCGACTCGGTCGCTTTTCAGCCTGGTCGTAGCTATGCTTTCATCAATTTCATTCGGGATGATGATGCCATTGCTGCGATGAAAGAGCTTAGTGGTTTTCCCCTTGCCGGAAATCCTCTTAGAATTGAGTTTGCCAAGGCGGTTAGTCTTGCCTACTTACCTTTACTCGTTACTTTTTTCGTTATACGTTTCACGTTTTTGTATTCAACTGTATATTCAACATTATCTAGTATAATTAACAATAGTTCTCAATTTCGCTCACAGGATAAACCACCAGCCCCGTCACGAGGTGAAGATTATTCAAAATTTCGAGATGAACAATATCATGGAGCTAAGGGATCTCCTTTCTTGCAGGAGTTTAGAGGGCGTGATGCTAGCCCTGACTCATTTTATGCTGAAAAAACTAAGATGAATGATAGAAATACTGAACCCAGTGAGGTGTTATGGATAGGATTTCCAGTCTCCCTAAAAGTAGATGAAATGAATTTAAGAAAGGCCTTCTCACCGTTTGGTGACATAGAAAAAATTACTACATTTCCTGGTCGAAGTTATGCTTTTGTTCGATTCAGGAGTTTAATATCAGCTAGCAGAGCAAAAGAGACCCTTCAGGGAAAGCTCTTTGGAAATTCTCGTGTCCACATTTGTTTTGCTAGGAATGAATCTGGCTCATCCAATAGTGGAAGGAGCTCAGCAAATGCCCCAACTTCGCCAATTTTGAAGTTGAATAGTCGCCAGGAATTTATGGATAACTACCAGCCTGACAAAAGCATAACTGGAGATCCTGGCATTAGATCTCAATTTTTCTCAAATTTGGAGTCTGAAGATTCTGATTCCTATAATTTTAACAGAAATAGTAGTTTATGGACAGGTGGGGGTGCTGCATTTGAATCAAGGAGATCTGGTGAAATGGAGTCTAAATTTGGTCCATCACCAGATTCTTACAGATATCACAGAAATTCGGCAAATGAGAGACTTGGGCACATGCATGGCCTTCCTCAGAGATTTTCTCATAACACTTCATTTTCTGAAGATCATTGGGAGTCAAGAGATGATGTCTATCCACACAATCATGAGTCCAAGAAATTGAAGACTGGCTCGTTTCCTCCTGAAAAGGAGCTTCCTGAGTATCCCTTATCTGAATTACACCAAGAAAAGCATGTTTTCCCAAAGTTGTACTCTGATTTTCATCAATCTGAGGCCTTTGATAAGAAGTTTGAGGCTGGACAATTGGGATATCAACAGATTTCTGAACGTCCAATGAAATTAGCTCTACCTTTTGGAGAAACGAATGAACCTTTGAGAGATCCTTATGATTCTTTCTTGGACTCTAATTCTGTCCCATCAAGCACCAACGGCAGAAAGCGTTTTGCTCCAGAATCAGAGCGTCCTTCTTTGAAAGAGTGGAAATGGGAAGGGACTATAGCTAAAGGAGGGACCCCTGTCTGTCGTGCTCGTTGCTTCCCTGTTGGGAAAATCATGGACATGATGTTGCCGGAATTCTTGGACTGCACAGCGAGGACGAGTCTAGACATGCTTTCAAAGCATTACTATGAAGCAGCTTCTGCTTGGGTTGTTTTCTTTGTCCCAGGAGGTGATTCTGAAATTGGATTGTATAATGAATTCATGAATTATCTTGGTGATAAGCAGAGAGCAGCAGTTGCTAAGTTGGATGATGAGACCACTTTGTTTCTCGTACCTCCATCAGATTTCTCTCAGAAAGTACTCAAGATACCTGGTAAATTGAGCATTTCTGGTGTAATTCTAAGGTTAGAGCGTTCTGGTCCAAATTTTATGCCTGAAAATAAGGACTCAAATTTGATGGTATTTCACGGAGGTGCATCATATTCTAAAGAATCGGTTTCTATTCCTCTGATGTCTGATTTCCGTCAAACTGGAGTGAACAATGTTTCTGTTCCGGCGAATACTATTGCAAGTTTATCCGATGCTTATAATGAAGACCATATTCATCAGCAAAATTCGATCGGACAAAACTGGTCTTCTCACCATCTGCAGAATTCAAATCTTGGCATTAGAAATATACCATCACAACCTTCCAAAAGCTCTATTGATTCTATTGTCCAAGACCATCACCCAGTACATATGTCTAGGGAGTTCCAAGAACCAAACTCTAATCGTTTTTCAGGTGGATATTCCGGCCTTCCTTTTACTGGAAACTTGATGTCAACTCAGGCAGAAACACAATCTGCAGTCTCTTTAACAACGACGACACCAGCCTTGCAGCCGGAGCAACTAGCACAATTAGCTTCATCTCTACTTGGGCCGCAAAGGCAGGCACAAATTGCCACAAATGTTTCTAGTGGGAAAGATCTAATGCACAGAAATACTTCTGAACACTTGTTCGGAACATCTATGTATTCTTCACAGAATAATCAGGTCAATTCTGGTCTTGCATCATCTCAATTTGGCCAACCTCAGCAATCTCAGGGGCCACATCAGCACCCGCCAGCCATAGATGTCCGGCAGGATACCGCTCAAAGAGAGGGTCAAGCAGTGGCCTCGAGTGGAGGGGAAGAGGCAGAAGCAGATCCACAGAAACGCCTGCAAGCTACATTACAGCTAGCTGCTGCCCTTCTTCAGCAAATTCAACAAGGAAAAGGAAGTTAA | 4239 | 42.84 | MSFINFINLVRKYGKQMESLDARSKFDFEDESLSSPASIAAKKYSFQESLHISSSTSSPQTFFSQDMRKRVIDSIKIVVFSAKINILMPFGPLAILVYNLSGHHGWVFFLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALKRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVFSKREQEFTKSSATVNSGLLLMAVMGLLFPAVLHSTHTELHFGKSELALSRFSSCIMLVAYAAYLFFQLRNDKNLYVPVDEVEVQAEENSDDEDAPEISKWESIIWLTILTAWISVLSEYLVNAIEGASVAMKIPVAFISVILLPIVGNAAEHAGAVMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWAMGRPMDLNFQLFETATLLMTVIVVAFMLQDGTSNYFKGLMLILCYLIVAASFFVHIDPSSVEKWSTHAEHVRGGVHPHTTLRVRTAGVHSHIALSGRGGGRDRYQKDNSRFEERSNSGRSSHSNPPSRHLWVGNLSHSIGEHDLTRHFLQFGDLDSVAFQPGRSYAFINFIRDDDAIAAMKELSGFPLAGNPLRIEFAKAVSLAYLPLLVTFFVIRFTFLYSTVYSTLSSIINNSSQFRSQDKPPAPSRGEDYSKFRDEQYHGAKGSPFLQEFRGRDASPDSFYAEKTKMNDRNTEPSEVLWIGFPVSLKVDEMNLRKAFSPFGDIEKITTFPGRSYAFVRFRSLISASRAKETLQGKLFGNSRVHICFARNESGSSNSGRSSANAPTSPILKLNSRQEFMDNYQPDKSITGDPGIRSQFFSNLESEDSDSYNFNRNSSLWTGGGAAFESRRSGEMESKFGPSPDSYRYHRNSANERLGHMHGLPQRFSHNTSFSEDHWESRDDVYPHNHESKKLKTGSFPPEKELPEYPLSELHQEKHVFPKLYSDFHQSEAFDKKFEAGQLGYQQISERPMKLALPFGETNEPLRDPYDSFLDSNSVPSSTNGRKRFAPESERPSLKEWKWEGTIAKGGTPVCRARCFPVGKIMDMMLPEFLDCTARTSLDMLSKHYYEAASAWVVFFVPGGDSEIGLYNEFMNYLGDKQRAAVAKLDDETTLFLVPPSDFSQKVLKIPGKLSISGVILRLERSGPNFMPENKDSNLMVFHGGASYSKESVSIPLMSDFRQTGVNNVSVPANTIASLSDAYNEDHIHQQNSIGQNWSSHHLQNSNLGIRNIPSQPSKSSIDSIVQDHHPVHMSREFQEPNSNRFSGGYSGLPFTGNLMSTQAETQSAVSLTTTTPALQPEQLAQLASSLLGPQRQAQIATNVSSGKDLMHRNTSEHLFGTSMYSSQNNQVNSGLASSQFGQPQQSQGPHQHPPAIDVRQDTAQREGQAVASSGGEEAEADPQKRLQATLQLAAALLQQIQQGKGS | 1412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6618326 | 6637490 | - | Bda023702.1 | Bda06g00458 | 8040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda06g00458 | 1412 | Pfam | SPOC domain | 1002 | 1116 | IPR012921 | - | |
Bda06g00458 | 1412 | Gene3D | - | 669 | 767 | IPR012677 | - | |
Bda06g00458 | 1412 | SUPERFAMILY | RNA-binding domain, RBD | 683 | 768 | IPR035979 | GO:0003676 | |
Bda06g00458 | 1412 | TIGRFAM | caca2: calcium/proton exchanger | 71 | 438 | - | - | |
Bda06g00458 | 1412 | MobiDBLite | consensus disorder prediction | 479 | 513 | - | - | |
Bda06g00458 | 1412 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 513 | 585 | IPR000504 | GO:0003723 | |
Bda06g00458 | 1412 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER | 11 | 450 | - | - | |
Bda06g00458 | 1412 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 11 | 450 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 | |
Bda06g00458 | 1412 | MobiDBLite | consensus disorder prediction | 885 | 912 | - | - | |
Bda06g00458 | 1412 | Gene3D | - | 489 | 587 | IPR012677 | - | |
Bda06g00458 | 1412 | MobiDBLite | consensus disorder prediction | 1330 | 1357 | - | - | |
Bda06g00458 | 1412 | TIGRFAM | cax: calcium/proton exchanger | 88 | 438 | IPR004798 | GO:0006816|GO:0015369 | |
Bda06g00458 | 1412 | MobiDBLite | consensus disorder prediction | 1330 | 1391 | - | - | |
Bda06g00458 | 1412 | CDD | RRM3_Spen | 515 | 584 | - | - | |
Bda06g00458 | 1412 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 696 | 751 | IPR000504 | GO:0003723 | |
Bda06g00458 | 1412 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 515 | 578 | IPR000504 | GO:0003723 | |
Bda06g00458 | 1412 | SUPERFAMILY | RNA-binding domain, RBD | 500 | 584 | IPR035979 | GO:0003676 | |
Bda06g00458 | 1412 | Gene3D | - | 134 | 276 | IPR044880 | - | |
Bda06g00458 | 1412 | Gene3D | - | 282 | 439 | IPR044880 | - | |
Bda06g00458 | 1412 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 683 | 757 | IPR000504 | GO:0003723 | |
Bda06g00458 | 1412 | MobiDBLite | consensus disorder prediction | 485 | 502 | - | - | |
Bda06g00458 | 1412 | Pfam | Sodium/calcium exchanger protein | 296 | 435 | IPR004837 | GO:0016021|GO:0055085 | |
Bda06g00458 | 1412 | Pfam | Sodium/calcium exchanger protein | 106 | 261 | IPR004837 | GO:0016021|GO:0055085 | |
Bda06g00458 | 1412 | MobiDBLite | consensus disorder prediction | 885 | 906 | - | - | |
Bda06g00458 | 1412 | SMART | rrm1_1 | 685 | 753 | IPR000504 | GO:0003723 | |
Bda06g00458 | 1412 | SMART | rrm1_1 | 514 | 581 | IPR000504 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda06g00458 | Bda-Chr6:6618326 | Bda09g00512 | Bda-Chr9:6780845 | 1.95E-07 | dispersed | |
Bda01g00159 | Bda-Chr1:22864235 | Bda06g00458 | Bda-Chr6:6618326 | 1.28E-109 | transposed | |
Bda04g00956 | Bda-Chr4:59242592 | Bda06g00458 | Bda-Chr6:6618326 | 0 | transposed | |
Bda07g00432 | Bda-Chr7:5540861 | Bda06g00458 | Bda-Chr6:6618326 | 0 | transposed | |
Bda08g00160 | Bda-Chr8:1476361 | Bda06g00458 | Bda-Chr6:6618326 | 1.50E-07 | transposed | |
Bda13g00559 | Bda-Chr13:6542330 | Bda06g00458 | Bda-Chr6:6618326 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda06g00458 | - | - | qsu:112036202 | 916.761 |