Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00458 ATGTCTTTCATCAACTTCATTAATCTGGTACGGAAATATGGAAAGCAGATGGAATCATTAGATGCAAGGTCCAAATTTGACTTTGAAGACGAGAGCCTTAGTAGTCCTGCATCCATAGCTGCAAAGAAATATTCCTTTCAGGAGTCGTTACACATATCCTCATCTACTAGTAGTCCGCAGACCTTTTTCTCTCAAGACATGAGGAAAAGGGTAATTGATAGTATCAAAATCGTCGTCTTTTCCGCAAAAATCAACATTCTCATGCCTTTTGGGCCCCTGGCAATCTTGGTTTATAACTTATCTGGCCATCATGGATGGGTCTTCTTTTTAAGCTTATTAGGGATCATACCTCTGGCCGAGCGTTTGGGTTATGCAACTGAGCAGCTGGCCTGCTACACCGGAGCCACAGTTGGAGGTCTTCTTAATGCTACTTTTGGAAATGCAACGGAATTGATAATATCTATTTATGCATTGAAAAGGGGAATGATCCGTGTTGTTCAACAGTCATTACTTGGCTCTATTCTGTCAAACATGTTACTAGTGCTTGGATGTGCATTTTTTGCTGGTGGACTCGTGTTTTCAAAACGAGAACAAGAATTCACTAAGTCATCTGCTACGGTGAACTCTGGATTGCTGCTAATGGCAGTCATGGGTCTTTTATTTCCGGCAGTCCTTCATTCCACTCATACTGAACTCCATTTTGGAAAGTCTGAGTTGGCTCTTTCGAGGTTTAGCAGCTGCATCATGCTGGTAGCATACGCTGCCTATCTTTTTTTCCAGTTGAGGAATGATAAAAATCTCTATGTCCCAGTTGATGAGGTTGAGGTTCAGGCTGAAGAGAATTCTGACGATGAAGATGCACCTGAGATCTCTAAATGGGAATCGATAATTTGGTTGACTATTTTGACAGCATGGATTTCAGTCCTCTCAGAATATTTAGTAAATGCCATTGAGGGAGCATCAGTGGCAATGAAAATACCAGTGGCATTCATTAGTGTTATCCTGCTCCCAATTGTGGGGAATGCTGCCGAGCACGCAGGTGCTGTAATGTTCGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTTGCCATTGGATCCTCAACCCAGATATCTATGTTCGGGATTCCCTTTTGCGTCGTAATCGGTTGGGCCATGGGTCGTCCGATGGACTTAAATTTTCAACTTTTCGAGACAGCCACCCTTCTCATGACTGTCATAGTCGTAGCCTTCATGCTTCAGGACGGTACCTCGAATTACTTCAAAGGCCTAATGCTTATTCTTTGCTACCTAATAGTAGCAGCAAGCTTTTTTGTACATATAGATCCATCTTCAGTAGAAAAATGGTCAACACATGCGGAGCACGTGCGCGGAGGCGTTCACCCTCACACGACTCTCCGTGTTCGAACGGCGGGCGTTCACTCTCACATAGCCCTCTCGGGGCGAGGAGGAGGAAGAGATCGCTATCAGAAAGATAACTCCAGATTTGAAGAGCGGAGTAATTCGGGGCGTTCCAGCCACAGTAACCCTCCTTCTAGGCACCTTTGGGTGGGAAATCTATCTCACAGCATTGGAGAGCATGATCTCACCCGTCATTTTCTACAGTTTGGAGACCTCGACTCGGTCGCTTTTCAGCCTGGTCGTAGCTATGCTTTCATCAATTTCATTCGGGATGATGATGCCATTGCTGCGATGAAAGAGCTTAGTGGTTTTCCCCTTGCCGGAAATCCTCTTAGAATTGAGTTTGCCAAGGCGGTTAGTCTTGCCTACTTACCTTTACTCGTTACTTTTTTCGTTATACGTTTCACGTTTTTGTATTCAACTGTATATTCAACATTATCTAGTATAATTAACAATAGTTCTCAATTTCGCTCACAGGATAAACCACCAGCCCCGTCACGAGGTGAAGATTATTCAAAATTTCGAGATGAACAATATCATGGAGCTAAGGGATCTCCTTTCTTGCAGGAGTTTAGAGGGCGTGATGCTAGCCCTGACTCATTTTATGCTGAAAAAACTAAGATGAATGATAGAAATACTGAACCCAGTGAGGTGTTATGGATAGGATTTCCAGTCTCCCTAAAAGTAGATGAAATGAATTTAAGAAAGGCCTTCTCACCGTTTGGTGACATAGAAAAAATTACTACATTTCCTGGTCGAAGTTATGCTTTTGTTCGATTCAGGAGTTTAATATCAGCTAGCAGAGCAAAAGAGACCCTTCAGGGAAAGCTCTTTGGAAATTCTCGTGTCCACATTTGTTTTGCTAGGAATGAATCTGGCTCATCCAATAGTGGAAGGAGCTCAGCAAATGCCCCAACTTCGCCAATTTTGAAGTTGAATAGTCGCCAGGAATTTATGGATAACTACCAGCCTGACAAAAGCATAACTGGAGATCCTGGCATTAGATCTCAATTTTTCTCAAATTTGGAGTCTGAAGATTCTGATTCCTATAATTTTAACAGAAATAGTAGTTTATGGACAGGTGGGGGTGCTGCATTTGAATCAAGGAGATCTGGTGAAATGGAGTCTAAATTTGGTCCATCACCAGATTCTTACAGATATCACAGAAATTCGGCAAATGAGAGACTTGGGCACATGCATGGCCTTCCTCAGAGATTTTCTCATAACACTTCATTTTCTGAAGATCATTGGGAGTCAAGAGATGATGTCTATCCACACAATCATGAGTCCAAGAAATTGAAGACTGGCTCGTTTCCTCCTGAAAAGGAGCTTCCTGAGTATCCCTTATCTGAATTACACCAAGAAAAGCATGTTTTCCCAAAGTTGTACTCTGATTTTCATCAATCTGAGGCCTTTGATAAGAAGTTTGAGGCTGGACAATTGGGATATCAACAGATTTCTGAACGTCCAATGAAATTAGCTCTACCTTTTGGAGAAACGAATGAACCTTTGAGAGATCCTTATGATTCTTTCTTGGACTCTAATTCTGTCCCATCAAGCACCAACGGCAGAAAGCGTTTTGCTCCAGAATCAGAGCGTCCTTCTTTGAAAGAGTGGAAATGGGAAGGGACTATAGCTAAAGGAGGGACCCCTGTCTGTCGTGCTCGTTGCTTCCCTGTTGGGAAAATCATGGACATGATGTTGCCGGAATTCTTGGACTGCACAGCGAGGACGAGTCTAGACATGCTTTCAAAGCATTACTATGAAGCAGCTTCTGCTTGGGTTGTTTTCTTTGTCCCAGGAGGTGATTCTGAAATTGGATTGTATAATGAATTCATGAATTATCTTGGTGATAAGCAGAGAGCAGCAGTTGCTAAGTTGGATGATGAGACCACTTTGTTTCTCGTACCTCCATCAGATTTCTCTCAGAAAGTACTCAAGATACCTGGTAAATTGAGCATTTCTGGTGTAATTCTAAGGTTAGAGCGTTCTGGTCCAAATTTTATGCCTGAAAATAAGGACTCAAATTTGATGGTATTTCACGGAGGTGCATCATATTCTAAAGAATCGGTTTCTATTCCTCTGATGTCTGATTTCCGTCAAACTGGAGTGAACAATGTTTCTGTTCCGGCGAATACTATTGCAAGTTTATCCGATGCTTATAATGAAGACCATATTCATCAGCAAAATTCGATCGGACAAAACTGGTCTTCTCACCATCTGCAGAATTCAAATCTTGGCATTAGAAATATACCATCACAACCTTCCAAAAGCTCTATTGATTCTATTGTCCAAGACCATCACCCAGTACATATGTCTAGGGAGTTCCAAGAACCAAACTCTAATCGTTTTTCAGGTGGATATTCCGGCCTTCCTTTTACTGGAAACTTGATGTCAACTCAGGCAGAAACACAATCTGCAGTCTCTTTAACAACGACGACACCAGCCTTGCAGCCGGAGCAACTAGCACAATTAGCTTCATCTCTACTTGGGCCGCAAAGGCAGGCACAAATTGCCACAAATGTTTCTAGTGGGAAAGATCTAATGCACAGAAATACTTCTGAACACTTGTTCGGAACATCTATGTATTCTTCACAGAATAATCAGGTCAATTCTGGTCTTGCATCATCTCAATTTGGCCAACCTCAGCAATCTCAGGGGCCACATCAGCACCCGCCAGCCATAGATGTCCGGCAGGATACCGCTCAAAGAGAGGGTCAAGCAGTGGCCTCGAGTGGAGGGGAAGAGGCAGAAGCAGATCCACAGAAACGCCTGCAAGCTACATTACAGCTAGCTGCTGCCCTTCTTCAGCAAATTCAACAAGGAAAAGGAAGTTAA 4239 42.84 MSFINFINLVRKYGKQMESLDARSKFDFEDESLSSPASIAAKKYSFQESLHISSSTSSPQTFFSQDMRKRVIDSIKIVVFSAKINILMPFGPLAILVYNLSGHHGWVFFLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALKRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVFSKREQEFTKSSATVNSGLLLMAVMGLLFPAVLHSTHTELHFGKSELALSRFSSCIMLVAYAAYLFFQLRNDKNLYVPVDEVEVQAEENSDDEDAPEISKWESIIWLTILTAWISVLSEYLVNAIEGASVAMKIPVAFISVILLPIVGNAAEHAGAVMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWAMGRPMDLNFQLFETATLLMTVIVVAFMLQDGTSNYFKGLMLILCYLIVAASFFVHIDPSSVEKWSTHAEHVRGGVHPHTTLRVRTAGVHSHIALSGRGGGRDRYQKDNSRFEERSNSGRSSHSNPPSRHLWVGNLSHSIGEHDLTRHFLQFGDLDSVAFQPGRSYAFINFIRDDDAIAAMKELSGFPLAGNPLRIEFAKAVSLAYLPLLVTFFVIRFTFLYSTVYSTLSSIINNSSQFRSQDKPPAPSRGEDYSKFRDEQYHGAKGSPFLQEFRGRDASPDSFYAEKTKMNDRNTEPSEVLWIGFPVSLKVDEMNLRKAFSPFGDIEKITTFPGRSYAFVRFRSLISASRAKETLQGKLFGNSRVHICFARNESGSSNSGRSSANAPTSPILKLNSRQEFMDNYQPDKSITGDPGIRSQFFSNLESEDSDSYNFNRNSSLWTGGGAAFESRRSGEMESKFGPSPDSYRYHRNSANERLGHMHGLPQRFSHNTSFSEDHWESRDDVYPHNHESKKLKTGSFPPEKELPEYPLSELHQEKHVFPKLYSDFHQSEAFDKKFEAGQLGYQQISERPMKLALPFGETNEPLRDPYDSFLDSNSVPSSTNGRKRFAPESERPSLKEWKWEGTIAKGGTPVCRARCFPVGKIMDMMLPEFLDCTARTSLDMLSKHYYEAASAWVVFFVPGGDSEIGLYNEFMNYLGDKQRAAVAKLDDETTLFLVPPSDFSQKVLKIPGKLSISGVILRLERSGPNFMPENKDSNLMVFHGGASYSKESVSIPLMSDFRQTGVNNVSVPANTIASLSDAYNEDHIHQQNSIGQNWSSHHLQNSNLGIRNIPSQPSKSSIDSIVQDHHPVHMSREFQEPNSNRFSGGYSGLPFTGNLMSTQAETQSAVSLTTTTPALQPEQLAQLASSLLGPQRQAQIATNVSSGKDLMHRNTSEHLFGTSMYSSQNNQVNSGLASSQFGQPQQSQGPHQHPPAIDVRQDTAQREGQAVASSGGEEAEADPQKRLQATLQLAAALLQQIQQGKGS 1412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6618326 6637490 - Bda023702.1 Bda06g00458 8040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00458 1412 Pfam SPOC domain 1002 1116 IPR012921 -
Bda06g00458 1412 Gene3D - 669 767 IPR012677 -
Bda06g00458 1412 SUPERFAMILY RNA-binding domain, RBD 683 768 IPR035979 GO:0003676
Bda06g00458 1412 TIGRFAM caca2: calcium/proton exchanger 71 438 - -
Bda06g00458 1412 MobiDBLite consensus disorder prediction 479 513 - -
Bda06g00458 1412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 513 585 IPR000504 GO:0003723
Bda06g00458 1412 PANTHER VACUOLAR CATION/PROTON EXCHANGER 11 450 - -
Bda06g00458 1412 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 11 450 IPR004713 GO:0006812|GO:0008324|GO:0016021
Bda06g00458 1412 MobiDBLite consensus disorder prediction 885 912 - -
Bda06g00458 1412 Gene3D - 489 587 IPR012677 -
Bda06g00458 1412 MobiDBLite consensus disorder prediction 1330 1357 - -
Bda06g00458 1412 TIGRFAM cax: calcium/proton exchanger 88 438 IPR004798 GO:0006816|GO:0015369
Bda06g00458 1412 MobiDBLite consensus disorder prediction 1330 1391 - -
Bda06g00458 1412 CDD RRM3_Spen 515 584 - -
Bda06g00458 1412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 696 751 IPR000504 GO:0003723
Bda06g00458 1412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 578 IPR000504 GO:0003723
Bda06g00458 1412 SUPERFAMILY RNA-binding domain, RBD 500 584 IPR035979 GO:0003676
Bda06g00458 1412 Gene3D - 134 276 IPR044880 -
Bda06g00458 1412 Gene3D - 282 439 IPR044880 -
Bda06g00458 1412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 683 757 IPR000504 GO:0003723
Bda06g00458 1412 MobiDBLite consensus disorder prediction 485 502 - -
Bda06g00458 1412 Pfam Sodium/calcium exchanger protein 296 435 IPR004837 GO:0016021|GO:0055085
Bda06g00458 1412 Pfam Sodium/calcium exchanger protein 106 261 IPR004837 GO:0016021|GO:0055085
Bda06g00458 1412 MobiDBLite consensus disorder prediction 885 906 - -
Bda06g00458 1412 SMART rrm1_1 685 753 IPR000504 GO:0003723
Bda06g00458 1412 SMART rrm1_1 514 581 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00458 Bda-Chr6:6618326 Bda09g00512 Bda-Chr9:6780845 1.95E-07 dispersed
Bda01g00159 Bda-Chr1:22864235 Bda06g00458 Bda-Chr6:6618326 1.28E-109 transposed
Bda04g00956 Bda-Chr4:59242592 Bda06g00458 Bda-Chr6:6618326 0 transposed
Bda07g00432 Bda-Chr7:5540861 Bda06g00458 Bda-Chr6:6618326 0 transposed
Bda08g00160 Bda-Chr8:1476361 Bda06g00458 Bda-Chr6:6618326 1.50E-07 transposed
Bda13g00559 Bda-Chr13:6542330 Bda06g00458 Bda-Chr6:6618326 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00458 - - qsu:112036202 916.761