Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00459 ATGGCTACCAATATCAGTGGTGGAGCAATTTCTTATGGATTGGCTGGCAAGGCGCGGAAACAGATAGCAAATACTGGAATTTCGAAGCCGCTTCCCTTCATACGGTCTAGAAAAGCCAATAATTCTTTAGATTGTATTGACAAGAAGGGTTTAGGCTACTCTAATAGAATTTGGCACAACTATTTGTCTGCTAAACATAGAACATCATTATCATCCGCTGTACCCAATCATCGGAATCACTGTTTTCTTGCAAGCTGTGGTAAGGTAAGTTCAGATTGCAATGTTGATTCCCCTGACGTGGATAGAAGATTAAAGTTAGATGAAGAGCTTCCTGCTAGCAATGATGCCAATGGTTCTCTTAAAGTTAAAGAAATTTCCATCCATCAGAATCAATATATGGACGTCAGACAGGAGCTCTTGAATCTCTCATTACCTGCTATCGCTGGACAAGCACTAGACCCACTAGCACAACTGATGGAAACTGCTTTTATTGGTAGATTGGGCCCGGTCGAGTTGGCTTCAGCAGGAATTTCCATAAACATCTTTAACTACGTATCAAAACTATTTAATATTCCACTATTGAGTGTTGCCACATCTTTTGTTGCTGAAGACATTGCAAAGAATGCTAATGAAGACCCTTCGTCAGGTTCTTCGAGTGAATATACCAATGGGAAACCTGGTGCTGGGGTATCTGATAGACGACAGTTATCTTCGGTGTCTACAGCTTTACTATTGGCAGTCGGGATTGGCCTGTTTGAGGCGTTAGGATTATATCTTGGATCTGGATTATTCTTAGATGCTATGGGTATATCTTCAGAGTCGTCGATGCGTATTCCAACGCGGAAATTCCTTTTAGTTAGATCCCTTGGTGCTCCAGCTGTTGTTCTGTCTTTGGCTCTTCAAGGCATTTTTCGTGCAGGTATTGGTAATTTATTGGCTGTATGTATGTTTCCAATATCTATGTATTGTTTACAGTTGGGTGTTACTGGAGCAGCCATTTCCACTGTTGCATCTCAGTATGTATTTATGTTGTTTTTTGGATTTCTCTTTTTCAGGTATGTAGTCACCATTTTAATGCTATGGTTTCTCAATAAGAGAGCAATACTAATGCCTCCAAAGATGGGAGCATTGCAGTTTGGTGTCTATTTTAAATCTGGTGGTTTTCTTATCGGAAGAACTCTGGCCGTTTTAACAACAATGACACTGGGAACAAGAATGGCTGCTCGTCAAGGTGCTGTGGCAATGGCGGCACATCAAATATGCATGCAAGTGTGGTTAGCTGTCTCTCTCCTTACAGATGCACTGGCTGCTTCCGGTCAGGCCTTGATTGCAAGTTCTATGTCAATGGAAGACTACAGGAATGTGAAAAAAGTAGCTGACTTTGTTTTGAAGATAGGAGTACTCACAGGCATTTCCTTGGCTGTGATTCTCGGTTTTTCTTTTAGCTCTTTGTCCACTTTGTTCACTGAGGATGCGGAAGTGCTAAAAATTGTTAGAACTGGGGTCTTATTCGTCAGTGCAAGTCAACCTCTCAATGCTCTTGCATATATTTTTGATGGTCTCCATTATGGTGTCTCTGACTTTTCTTATGCAGCTTACTCAATGATGACAGTTGGGGCAATCTCTTCGACATTTTTGCTCTGTGTTCCATCAAATTTTGGACTTCCTGGTGTTTGGTTAGGCTTGACACTCTTCATGGGCTTGAGAATGTTAGCTGGTTACCTCAGATTACTTTCAAGGAATGGTCCATGGTGGTTCCTGCATAGCGAACTAAGGTTCTAG 1782 41.53 MATNISGGAISYGLAGKARKQIANTGISKPLPFIRSRKANNSLDCIDKKGLGYSNRIWHNYLSAKHRTSLSSAVPNHRNHCFLASCGKVSSDCNVDSPDVDRRLKLDEELPASNDANGSLKVKEISIHQNQYMDVRQELLNLSLPAIAGQALDPLAQLMETAFIGRLGPVELASAGISINIFNYVSKLFNIPLLSVATSFVAEDIAKNANEDPSSGSSSEYTNGKPGAGVSDRRQLSSVSTALLLAVGIGLFEALGLYLGSGLFLDAMGISSESSMRIPTRKFLLVRSLGAPAVVLSLALQGIFRAGIGNLLAVCMFPISMYCLQLGVTGAAISTVASQYVFMLFFGFLFFRYVVTILMLWFLNKRAILMPPKMGALQFGVYFKSGGFLIGRTLAVLTTMTLGTRMAARQGAVAMAAHQICMQVWLAVSLLTDALAASGQALIASSMSMEDYRNVKKVADFVLKIGVLTGISLAVILGFSFSSLSTLFTEDAEVLKIVRTGVLFVSASQPLNALAYIFDGLHYGVSDFSYAAYSMMTVGAISSTFLLCVPSNFGLPGVWLGLTLFMGLRMLAGYLRLLSRNGPWWFLHSELRF 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6640286 6644784 - Bda023703.1 Bda06g00459 8041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00459 593 TIGRFAM matE: MATE efflux family protein 145 559 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda06g00459 593 Pfam MatE 398 536 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda06g00459 593 MobiDBLite consensus disorder prediction 210 225 - -
Bda06g00459 593 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 81 590 IPR044644 -
Bda06g00459 593 CDD MATE_DinF_like 137 579 IPR044644 -
Bda06g00459 593 MobiDBLite consensus disorder prediction 210 232 - -
Bda06g00459 593 PANTHER PROTEIN DETOXIFICATION 81 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00459 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - jre:109006641 650.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00459 Bda-Chr6:6640286 Bda07g01031 Bda-Chr7:12152090 6.67E-118 dispersed
Bda06g00459 Bda-Chr6:6640286 Bda10g00723 Bda-Chr10:41644974 2.04E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g236 . . Bda06g00459 . . . . Bma12g00863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car11g01408 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008463 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00459 Bda_Chr06 FPKM 5.847937 6.335925 6.83901 6.069324 42.752422 44.815289 40.019501 2.267091 2.418129