Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00468 ATGGATTTCTCGCTCAAGAAGTCTTTTAAATCCTACGCCTCTTTGAAGAGCGGTAGGAAGGTTTCTGCTAACGGAACTACAGACTGTACTCCTGAACAGCTCCCCATTCTCTTAGACTCTGATTCTGAAGATCGAACTCGTCTTCTTGATCGGCGCCTGTCAATGAGGGACACTGCACTCCCTGTGCGTAGCGAAGTGATCGTCAAAATCGACGACGGCGATTCTTCCACTGGCTCAACAACGATGGATTCAAAGAACACTGGCGGCAACTTATTCCGGAACTCTAGTTATGATTTCTGGAACGACGTTGAAGACGGAGATAATGCCACTGGTTCTACTGCTAGAACGGGCGATAGCTTTGATTTGGCGAGACAACGGCCAGCTTTGGACGATCCACCTTCGAAGCTGATTGGACAGTTCTTGCATAAACAGAAAGCTTCTGGTGATATATCACTGGACATGGATTTAGAAATGGATGAGCTCTGTCGAGATAAGACTTTGCCTCCAGTCGCGGAGTCTCCGGTGGTTCGGACATCTAGGGAAATCAAAGTTTCTTTCCAGCCTAATAACGAGGCTAATAACAACGACATGGTTCGAAGGCGGTGCAGAGACTCGTCGGACCAGGAAGAACATGAGAGACAACAGCAACAAGATCGTCGCATGCCTTCCAATGTCGGAGGTAATCACAAGGACGGTGGAGCCGAGGTTGTAAAGTGCACATCGAATTCTTCATTTCAGAGAGAATATTCATTCCAGAGGAACTCTGGGTTGTTGAAGACGAAAACAAGGTCTAGGTTACTCGACCCTCCTGCAGAGCCGGACCGGAGGTCCGACAGGATTCCTTCGAAGTCGGGTCAAGTGCGATCTGGGTTGTTGTCTAGAGTTATGGATGATGAAGAAGATGATCCTTTTCTGGGGGAGGATCTACCAGATGAGTATAAAAGGGCTGATTTCAGCATTTTGACTCTGCTTCAATGGGTGAGTTTGATTCTGATCATAGCAGCTTTAGTTGTCACACTTTATATTCCTTTTTTGAGGCGCAAGAATCTGTGGAAACTCAAACTGTGGAAATGGGAGTTGATGGTTTTCGTTCTGATATGTGGAAGATTGATATCTGGTTGGGGGATTAGGATAGCTGTGTTCTTCATAGAGAGAAACTTTCTTCTTCGCAAAAGGGTTTTATATTTTGTCTATGGAATTCGAAAAGCTGTCCAGAATTGTCTCTGGCTTGGTCTTGTCTTAATTGCTTGGCATCTGCTCTTTGACAAGAAGGTCGAGAGGGAAACTAACAGTAAAGCACTTGAATATGTAACTAAGATTCTTGTCTGTCTATTGGTCGGCACCCTACTTTGGTTGGTTAAAACTCTCATAATCAAAGTCCTGGCCTCCTCATTCCATGTCAGCACTTATTTTGATCGAATTCAGGATTCGCTTTTCAACCAATATGTAATCGAGACACTATCTGGACCGCCATTGATTGAGATTCAAAAGAACGAAGAAGACGAAGAAAAGCTCGCCAACGAGGTCCGAAAGTTGCAGAATGCAGGGGCTACCGTCCCTCCTGATCTTAAAGAAACCATGAAAGGAGGAAGGGTGATAGGGAGTGGAGGGCTCCAGAAAAGCCCCCGTGGGAAAAGCGAAAAGCTTTCTCGGACAATGTCTAATAAGGGAGATGAAGGTATTACCATTGACCATTTACACAAGCTGAGTCCTAAAAATGTGTCAGCTTGGAAAATGAAGAGATTGATTAAGTTAGTCCGGAATGGGGCTCTTTCTACTCTGGATGAGCAGATAAAGGACTCCACTCAGGGGGATGAGTCTGCTACCAAGATTAGAAGTGAAGTAGAGGCAAAAACTGCAGCCAGGAGAATTTTTCTGAATGTGGCCAAGCATGGAAACAAGTACATCTATCTCGAGGATATAATGCGCTTCATGCCAGAAGATAAAGCTTTGAAAGCTTTGAATCTTTTTGAAGGAGCATCTGAGAGCAGTAGAATAAGCAAGGCTTCTTTGAAAAACTGGGTGGTAAATGCATTTAGAGAGCGCAGGGCCCTTGCTTTGACACTGAACGATACCAAAACAGCCGTGAACAAGCTTCATCACACGGTGAATGTGGTGGTTGGCATCCTAATCGTGGTCATATGGCTGCTCATACTCGAAATCGCCACCAGCAAATTTCTCCTTTTCGTTAGCTCCCAACTCGTTCTCGTTGCATTCGTATTTGGAAACACGTGCAAGACTGTGTTTGAAGCGATAATCTTTCTATTTTCGATGCATCCGTTTGACGTTGGAGATCGGTGCGAAATTGATGGAGTTCAGATGGTTGTAGAAGAAATGAACATCTTAACGACTGTTTTTCTGAGATATGATAACCAGAAGATAATGTATCCGAACAGTGTTCTTGCAACTAAAGCCATACATAACTTCTACCGCAGTCCTGACATGGGAGATGGTGTTGAATTCTGCCTCCATATATCTACTCCTGCCGAAAAGATTGCTCTAATTAGACAGAGAGTACTGAGTTACATAGAGAACAAGAAGGAGCATTGGCATCCCAATCCTATGATTGTAGTGAAGGACTTGGAAGAGTTAAACAGGCTGAGAATAGCGGTCTGGCTGACGCACAGAATGAACCATCAAGACATGGGAGAAAGGTGGGCTAGGAGAGCCCTCCTGGTTGAAGAAATGGCAAAAATTTTCAGAGAGCTCGACATCCAGTATCGCCTTTACCCGCTCGACATTAATGTCCGTTCGATGCCTCCCTCGAGCTCCCCTGGTTTTCTATCTAACTAG 2793 44.86 MDFSLKKSFKSYASLKSGRKVSANGTTDCTPEQLPILLDSDSEDRTRLLDRRLSMRDTALPVRSEVIVKIDDGDSSTGSTTMDSKNTGGNLFRNSSYDFWNDVEDGDNATGSTARTGDSFDLARQRPALDDPPSKLIGQFLHKQKASGDISLDMDLEMDELCRDKTLPPVAESPVVRTSREIKVSFQPNNEANNNDMVRRRCRDSSDQEEHERQQQQDRRMPSNVGGNHKDGGAEVVKCTSNSSFQREYSFQRNSGLLKTKTRSRLLDPPAEPDRRSDRIPSKSGQVRSGLLSRVMDDEEDDPFLGEDLPDEYKRADFSILTLLQWVSLILIIAALVVTLYIPFLRRKNLWKLKLWKWELMVFVLICGRLISGWGIRIAVFFIERNFLLRKRVLYFVYGIRKAVQNCLWLGLVLIAWHLLFDKKVERETNSKALEYVTKILVCLLVGTLLWLVKTLIIKVLASSFHVSTYFDRIQDSLFNQYVIETLSGPPLIEIQKNEEDEEKLANEVRKLQNAGATVPPDLKETMKGGRVIGSGGLQKSPRGKSEKLSRTMSNKGDEGITIDHLHKLSPKNVSAWKMKRLIKLVRNGALSTLDEQIKDSTQGDESATKIRSEVEAKTAARRIFLNVAKHGNKYIYLEDIMRFMPEDKALKALNLFEGASESSRISKASLKNWVVNAFRERRALALTLNDTKTAVNKLHHTVNVVVGILIVVIWLLILEIATSKFLLFVSSQLVLVAFVFGNTCKTVFEAIIFLFSMHPFDVGDRCEIDGVQMVVEEMNILTTVFLRYDNQKIMYPNSVLATKAIHNFYRSPDMGDGVEFCLHISTPAEKIALIRQRVLSYIENKKEHWHPNPMIVVKDLEELNRLRIAVWLTHRMNHQDMGERWARRALLVEEMAKIFRELDIQYRLYPLDINVRSMPPSSSPGFLSN 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6725575 6728940 + Bda023714.1 Bda06g00468 8050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00468 930 MobiDBLite consensus disorder prediction 196 218 - -
Bda06g00468 930 SUPERFAMILY Sm-like ribonucleoproteins 750 809 IPR010920 -
Bda06g00468 930 MobiDBLite consensus disorder prediction 108 135 - -
Bda06g00468 930 Gene3D - 760 809 IPR023408 -
Bda06g00468 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 922 - -
Bda06g00468 930 MobiDBLite consensus disorder prediction 183 236 - -
Bda06g00468 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 922 IPR016688 -
Bda06g00468 930 MobiDBLite consensus disorder prediction 265 282 - -
Bda06g00468 930 MobiDBLite consensus disorder prediction 262 292 - -
Bda06g00468 930 MobiDBLite consensus disorder prediction 519 557 - -
Bda06g00468 930 PIRSF Memb_At2g17000 56 930 IPR016688 -
Bda06g00468 930 Pfam Mechanosensitive ion channel 703 906 IPR006685 GO:0016020|GO:0055085
Bda06g00468 930 Coils Coil 495 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00468 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1231.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00302 Bda-Chr3:2654706 Bda06g00468 Bda-Chr6:6725575 1.31E-150 dispersed
Bda06g00468 Bda-Chr6:6725575 Bda11g00316 Bda-Chr11:3506350 5.93E-175 dispersed
Bda14g00631 Bda-Chr14:4734301 Bda06g00468 Bda-Chr6:6725575 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00254 . 1 535 Mechanosensitive Ion Channel Family AT4G00290 54.9 1.0e-149 526.9
Bda04g00117 . 1 605 Mechanosensitive Ion Channel Family AT5G10490 63.3 7.8e-201 697.2
Bda01g00910 . 16 621 Mechanosensitive Ion Channel Family AT5G10490 54.2 1.3e-174 610.1
Bda13g01360 . 247 763 Mechanosensitive Ion Channel Family AT5G10490 61.4 1.1e-167 587.0
Bda01g00910 . 1 617 Mechanosensitive Ion Channel Family AT1G58200 55.3 6.3e-182 634.4
Bda04g00117 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 59.0 4.4e-175 611.7
Bda13g01360 . 247 746 Mechanosensitive Ion Channel Family AT1G58200 59.9 4.5e-156 548.5
Bda06g00468 . 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.9 1.7e-248 855.9
Bda14g00631 . 1 821 Mechanosensitive Ion Channel Family AT1G53470 55.4 8.3e-243 837.0
Bda06g00468 . 63 925 Mechanosensitive Ion Channel Family AT3G14810 53.2 1.9e-236 815.8
Bda14g00631 . 2 827 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-226 781.9
Bda06g00468 . 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.2e-280 961.8
Bda14g00631 . 10 826 Mechanosensitive Ion Channel Family AT1G78610 57.5 5.6e-260 894.0
Bda06g00468 . 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.9 5.7e-225 777.7
Bda14g00631 . 142 820 Mechanosensitive Ion Channel Family AT2G17000 58.5 8.2e-224 773.9
Bda14g00631 . 116 566 Mechanosensitive Ion Channel Family AT2G17010 60.8 1.0e-144 510.8
Bda03g00130 . 55 776 Mechanosensitive Ion Channel Family AT5G19520 51.4 2.3e-193 672.5
Bda03g00130 . 61 776 Mechanosensitive Ion Channel Family AT5G12080 56.0 1.0e-214 743.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00468 Bda_Chr06 FPKM 48.585587 58.008629 36.252518 34.916531 24.432518 23.020538 25.601639 8.62222 9.306325