Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00469 ATGGAAGTACTGAGAAGTAGCTCAACTTCTGTTCTCTCTCACCGGACGACGGCCACTGGACTGAGTCTTGGATTTCCTCTCCCTAAACCTACCACCGGAAACCCCCATTTCTGTTCTTCCCCTAAACTTACTATCCTTTGCGGAGCTCTTACCAAACAAGGCCACCGCTTCCTCTCTACTTTGGTTTTAACGGCCGCCGCCGGAGATGAGTCCGCGACGAATCGCTTGATTCGTAAATTCGTCGCCAGTTCTCCCAAATCTATTTCGCTTAATGCTCTTTCTACTCTTCTCGCACCGGGAGCAGATTATCCCCGTCTATCCGCTCTTGCTCTCGCTCTCTACTCCAGAATTAAAGAAGCATCATGGTTCGTATGGAACCCAAAGCTAATGGCAGAATTGGCTGCAGTGCTTGATAAAAATGGTCATCACAATGACTCGGAAATCCTAATTTCTGAAACGATTGCAAAGATACGAGGTCGAGAAAGAGAGCTTGTGCTTTTCTATTGTCAATTGATTGAATCTCACTCCAAGCACAGTTCGGAAAGAGGATTCGACCAGTCTTTCAAGGAACTGAATCAGCTCATTCATAATTCATCCTCTGTTTATGTCAAACGCAGGGCTTATGAATCGATCATCAGCGGATTATCCTGTATGGATAAACCTCGTGAAGCTGAAAATTTCGTTGAAGGGATGAGAGAAAAGGGGCTTAATCCGTCTGCATTTGAGTACAAATCTATTCTACATGGCTATGGAAGAATAGGATTGTTTGGAGATATGAATACAACCATTGAGAAAATGGAGAACGATGGATTTACCATCGACACAGTTTGCTCGAACATGGTTCTTTCTTCATATGGAGCTCATAACAAGCTCCCCGAAATGGTTTTGTGGCTCCGGAAAATGAAAGCTGTAGGAATTCCCTTCTCCATTAGAACATATAATTCCGTCCTGAATTCCTGCCCAATGATTATGTCGATGCTACGAGACACAGGCAGTGTTCCGCTTTCGATTGAAGAGTTATCTGATGTTTTGGATAGAGACGAGTCTTTGCTGGTTAAAGAGTTGACTGGATCATCTCTCATGGAGGAAATGATGGTGTGGGAGGCTAAGGAGATGAAGTTGGATTTACATGGGATGCACCTAGGAACAGGTTATTTGATAACGCTTCAATGGTTGAAGGAGCTTCGTCTCAGGTTCAACGATGATAATAGTATAACACCGGTCGAGATTACAGTGGTTTGCGGATCGGGAAACCATAGTAGTGTTAGAGGAGAATCTCCCCTGAAATATTTAGTGAAGAAGATGCTGGTTCGGTTGGATAGCCCTCTGAAAATAGATAGGAAGAATACTGGTTGCTTTGTAGCCAAAGGAAAAGTTGTGAAGAATTGGTTATGCAAATGTTGA 1404 43.66 MEVLRSSSTSVLSHRTTATGLSLGFPLPKPTTGNPHFCSSPKLTILCGALTKQGHRFLSTLVLTAAAGDESATNRLIRKFVASSPKSISLNALSTLLAPGADYPRLSALALALYSRIKEASWFVWNPKLMAELAAVLDKNGHHNDSEILISETIAKIRGRERELVLFYCQLIESHSKHSSERGFDQSFKELNQLIHNSSSVYVKRRAYESIISGLSCMDKPREAENFVEGMREKGLNPSAFEYKSILHGYGRIGLFGDMNTTIEKMENDGFTIDTVCSNMVLSSYGAHNKLPEMVLWLRKMKAVGIPFSIRTYNSVLNSCPMIMSMLRDTGSVPLSIEELSDVLDRDESLLVKELTGSSLMEEMMVWEAKEMKLDLHGMHLGTGYLITLQWLKELRLRFNDDNSITPVEITVVCGSGNHSSVRGESPLKYLVKKMLVRLDSPLKIDRKNTGCFVAKGKVVKNWLCKC 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6729358 6730961 - Bda033760 Bda06g00469 8051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00469 467 SUPERFAMILY SMR domain-like 371 456 IPR036063 -
Bda06g00469 467 Gene3D - 373 456 IPR036063 -
Bda06g00469 467 Gene3D Tetratricopeptide repeat domain 170 326 IPR011990 GO:0005515
Bda06g00469 467 PANTHER OS02G0120000 PROTEIN 46 466 - -
Bda06g00469 467 SMART SMR_2 371 458 IPR002625 -
Bda06g00469 467 ProSiteProfiles Smr domain profile. 374 458 IPR002625 -
Bda06g00469 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Bda06g00469 467 PANTHER ATPASE EXPRESSION PROTEIN 3 46 466 - -
Bda06g00469 467 TIGRFAM PPR: pentatricopeptide repeat domain 207 239 IPR002885 -
Bda06g00469 467 Pfam PPR repeat 278 306 IPR002885 -
Bda06g00469 467 Pfam PPR repeat 208 236 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00469 - - - bhj:120089515 538.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00469 Bda-Chr6:6729358 Bda08g01050 Bda-Chr8:22218092 2.85E-07 dispersed
Bda06g00469 Bda-Chr6:6729358 Bda05g01225 Bda-Chr5:60158551 5.95E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g214 . Blo15g00393 Bda06g00469 . Bpe07g00705 . . Bma12g00911 . . . Cma20g00733 . Car20g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00731 . . . . Cpe16g00334 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011207 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00469 Bda_Chr06 FPKM 0.352218 0.500278 0.465414 0.748525 0.803034 0.463318 0.534669 7.060907 8.03492