Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00470 ATGAACAAGAGAGCAAAAACGAGCATCGACAATGCTCTGGCAGATGTATTGAAACGGGAGGTAGGCGAGCTTTCCGCTAGGAATTTCGCTCACCGCCTCGCTGCCTCCGAGGATCTTGTGCTCCGATTTGATATTGACAGGAAATTAGAAAAGCACAGAGGTTGTGTGAACACATTGAGCTTTAGTGATGATGGTGACATTCTAGTCTCAGGCTCGGATGACAGGCATGTAATTCTCTGGGATTGGGAAACTGGGCGGATCAAGCTTTCCTTTCATTCTGGCCACAGTAACAATGTTTTCCAGGCGAAGATCATGTCTGGTACTGATAATCGAAGCATTGTTACTTGTGGTGCAGATGGGCAGGTGAGACATGCTCAAATTCTTGAAAATGGACGTGTGGAGCCTGTTCTGCTTGCTAGACATTATGGAGGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCGCATATATTTTTTTCTTGCGGTGAAGATGGATTGGTGCAACACTTTGATTTAAGAACTGGAGGTGCAACTGAACTTTTCACATGCCAAGCTGTTAATAGGCAGAGACGGTACACATCACTCATCCAACTAAATGCAATTTCAATTGATCCAAGGAACCCAAATCTCTTCGCTGTTGCTGGGTCAGATGAGTATGCTCGTCTTTATGATATACGAAAATACAAGTGGGATGGATCATCTGATTTTGGTCGACCTATCAACTACTTTTGTCCCACACATTTGATTGGTGACGACAATGTTGGAATTACAGGCTTGGCCTTTTCAGAACTAAGTGAACTTCTTCTCTCATACAATGATGAAAATATATACCTTTTTACTCGGCATATGGGTTTGGGATCAAATCCCGTTCCAGCCTCTCCAGAACCTGTTCCTTGTGATGCAAAGGAAGTAGGGACTGATGACGATCCCATCACATCAATGGTGGATTCTGGTGGAGTCGTTTCTCCTCAAGTTTACAAGGGGCACAGGAACTGTGAAACAGTGAAAGGTGTAAACTTTTTAGGGCCTAAATGTGAGTATGTCATGAGTGGTTCTGACTGTGGTCGTATATTCATTTGGAAAAAGAAAACTGGGGAGCTGATACGGGTCATGGAAGCAGATAAGCATATTGTCAACTGTATTGAGTGCCATCCTCATAACACTGTTCTTGCAAGTAGTGGAATAGAAGATGACATTAAGATATGGATCCCAAAGGCCCTCGAGAGAGCTAAGCTTCCTGCAAAAATTGAACAGAAACCCAAGTCCAGGGGCTGGATGTACCACATGGCTTCGCCGGAGGATCTGATGATGCAACTCTTTTCACTTCCGAGAAGAGGAAGTAGCCTGGACCACGAGGGAGAAAACTCGGATGCGGGAAGGCAACTTCTGGATCTTATAATGACGTTTAATGCCAACAGTGACGTTTCTTCCGACAGCGGAGAGGATGCCGGTCAAGAAGACATTTATAGGAGCAGATTCTCGCGGCGATAA 1491 45.0 MNKRAKTSIDNALADVLKREVGELSARNFAHRLAASEDLVLRFDIDRKLEKHRGCVNTLSFSDDGDILVSGSDDRHVILWDWETGRIKLSFHSGHSNNVFQAKIMSGTDNRSIVTCGADGQVRHAQILENGRVEPVLLARHYGGAHKLAIEPGSPHIFFSCGEDGLVQHFDLRTGGATELFTCQAVNRQRRYTSLIQLNAISIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSSDFGRPINYFCPTHLIGDDNVGITGLAFSELSELLLSYNDENIYLFTRHMGLGSNPVPASPEPVPCDAKEVGTDDDPITSMVDSGGVVSPQVYKGHRNCETVKGVNFLGPKCEYVMSGSDCGRIFIWKKKTGELIRVMEADKHIVNCIECHPHNTVLASSGIEDDIKIWIPKALERAKLPAKIEQKPKSRGWMYHMASPEDLMMQLFSLPRRGSSLDHEGENSDAGRQLLDLIMTFNANSDVSSDSGEDAGQEDIYRSRFSRR 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6732201 6737362 + Bda023715.1 Bda06g00470 8052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00470 496 MobiDBLite consensus disorder prediction 473 496 - -
Bda06g00470 496 Pfam WD domain, G-beta repeat 48 81 IPR001680 GO:0005515
Bda06g00470 496 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 7 473 - -
Bda06g00470 496 Gene3D - 35 404 IPR015943 GO:0005515
Bda06g00470 496 SMART WD40_4 319 361 IPR001680 GO:0005515
Bda06g00470 496 SMART WD40_4 42 81 IPR001680 GO:0005515
Bda06g00470 496 SMART WD40_4 241 280 IPR001680 GO:0005515
Bda06g00470 496 SMART WD40_4 188 224 IPR001680 GO:0005515
Bda06g00470 496 SMART WD40_4 364 403 IPR001680 GO:0005515
Bda06g00470 496 SMART WD40_4 84 126 IPR001680 GO:0005515
Bda06g00470 496 SMART WD40_4 132 171 IPR001680 GO:0005515
Bda06g00470 496 SUPERFAMILY WD40 repeat-like 42 402 IPR036322 GO:0005515
Bda06g00470 496 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 7 473 IPR045151 -
Bda06g00470 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 86 - -
Bda06g00470 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00470 K11804 DCAF8; DDB1- and CUL4-associated factor 8 - zju:107427406 737.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00470 Bda-Chr6:6732201 Bda04g00146 Bda-Chr4:3969533 5.23E-11 dispersed
Bda11g00790 Bda-Chr11:7871614 Bda06g00470 Bda-Chr6:6732201 1.05E-20 transposed
Bda11g01800 Bda-Chr11:53025706 Bda06g00470 Bda-Chr6:6732201 2.73E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00470 Bda_Chr06 FPKM 0.902494 1.66588 6.062858 3.556226 15.178234 8.951477 15.152663 0.109204 0.0