Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00478 ATGGCGTGTAAGAGAATTGTGAAGGAGCTCAAGGACCTTCAGCGAGACCCACCAACTTCGTGCAGCGCAGGCCCGGTGGCGGAGGATATGTTTCATTGGCAAGCTACCATTATTGGTCCAAACGACAGCCCTTACGCCGGCGGCGTCTTTCTCGTCACCATTCATTTCCCACCTGATTATCCGTTTAAACCTCCGAAGGAGGATTTTCATTCGCAGGTTGCCTTCAGAACCAAGGTTTTCCATCCAAACATTAACAGCAATGGCAACATCTGTCTAGACATTCTCAAGGAGCAGTGGAGCCCAGCTCTGACCATATCTAAGGTGATCAAACTGGAAATTCTCTTGGTTCTTTCGGAAATAAAATTGGTCTGGTTGTTAATGCAGGTTTTACTGTCTATATGCTCCCTGCTGACCGACCCGAATCCCGATGACCCGCTCGTCCCGGAGATCGCTCATATGTGCAAGTCCGACAAGGTCAAGTATGAATCTACTGCCCGGAGCTGGACTCATAAATATGCCATGGGTTAA 528 48.86 MACKRIVKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKEDFHSQVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVIKLEILLVLSEIKLVWLLMQVLLSICSLLTDPNPDDPLVPEIAHMCKSDKVKYESTARSWTHKYAMG 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6824690 6825377 - Bda023723.1 Bda06g00478 8060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00478 175 Pfam Ubiquitin-conjugating enzyme 5 117 IPR000608 -
Bda06g00478 175 Pfam Ubiquitin-conjugating enzyme 120 168 IPR000608 -
Bda06g00478 175 CDD UBCc 3 169 IPR000608 -
Bda06g00478 175 PANTHER BNAA01G32320D PROTEIN 3 109 - -
Bda06g00478 175 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 109 - -
Bda06g00478 175 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 127 172 - -
Bda06g00478 175 SUPERFAMILY UBC-like 2 174 IPR016135 -
Bda06g00478 175 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 174 IPR000608 -
Bda06g00478 175 Gene3D Ubiquitin Conjugating Enzyme 1 175 IPR016135 -
Bda06g00478 175 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 80 95 IPR023313 -
Bda06g00478 175 SMART ubc_7 4 174 - -
Bda06g00478 175 PANTHER BNAA01G32320D PROTEIN 127 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00478 - - K06689 pvy:116124150 289.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00478 Bda-Chr6:6824690 Bda07g01918 Bda-Chr7:36640752 2.36E-94 dispersed
Bda06g00478 Bda-Chr6:6824690 Bda11g00225 Bda-Chr11:2751790 1.18E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g159 . Blo15g00379 Bda06g00478 . Bpe07g00716 . . . Cmo19g00745 Cmo11g01736 . . . . Sed04g3854 Cpe04g00588 Cpe15g00590 Bhi05g01717 Tan02g0688 Cmetu01g2289 . Hepe02g0427 . . Cla02g00431 Cam02g0439 Cec02g0437 Cco02g0455 Clacu02g0440 Cmu02g0435 Cre02g0769 . . . . . Csa07g00096 . Cme01g01265 . . . . . . . . . . . . Cma19g00737 . Car19g00566 . . . . . . . . . . . . . . . . Lsi11g01197 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251